Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
LA [auth k]SCOP2B SuperfamilyABC transporter-like P-loop ATPases8089860 3002020 SCOP2B (2022-06-29)
LA [auth k]SCOP2B SuperfamilyABC transporter-like P-loop ATPases8089861 3002020 SCOP2B (2022-06-29)
LA [auth k]SCOP2B Superfamily4Fe-4S ferredoxins8089857 3000020 SCOP2B (2022-06-29)
KSCOP2B Superfamily50S Ribosomal protein L14-like8053075 3000433 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyWinged helix DNA-binding domain8055720 3000034 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyNucleic acid-binding proteins8052707 3000135 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052708 3002138 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyL30e-like8063980 3001739 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyS15/NS1 RNA-binding domain8052971 3001284 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyHomeodomain-like8052970 3000001 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyTranslational machinery components8097824 3000571 SCOP2B (2022-06-29)
R [auth S]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082683 3000100 SCOP2B (2022-06-29)
T [auth V]SCOP2B SuperfamilyWinged helix DNA-binding domain8089322 3000034 SCOP2B (2022-06-29)
U [auth W]SCOP2B SuperfamilyRibosomal protein S108097814 3001336 SCOP2B (2022-06-29)
W [auth Y]SCOP2B SuperfamilyRibosomal protein S88079081 3000709 SCOP2B (2022-06-29)
Z [auth b]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053150 3000068 SCOP2B (2022-06-29)
BA [auth d]SCOP2B SuperfamilyNucleic acid-binding proteins8095265 3000135 SCOP2B (2022-06-29)
CA [auth e]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052584 3000068 SCOP2B (2022-06-29)
CSCOP2 FamilyRibosomal protein S2-like8097825 4003744 SCOP2 (2022-06-29)
CSCOP2 SuperfamilySIS domain/Ribosomal protein S2-like8097826 3001397 SCOP2 (2022-06-29)
EA [auth g]SCOP2B SuperfamilyWD40 repeat-like8097816 3001694 SCOP2B (2022-06-29)
FA [auth n]SCOP2B SuperfamilyWinged helix DNA-binding domain8090991 3000034 SCOP2B (2022-06-29)
GA [auth i]SCOP2B SuperfamilyRibosomal protein S30e-like8053455 3002190 SCOP2B (2022-06-29)
KA [auth j]SCOP2 FamilyCold shock DNA-binding domain-like8097821 4001909 SCOP2 (2022-06-29)
KA [auth j]SCOP2 SuperfamilyNucleic acid-binding proteins8097822 3000135 SCOP2 (2022-06-29)
MA [auth U]SCOP2B SuperfamilyS13-like H2TH domain8101439 3000053 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRibosomal S3Ae-like8053208 3002166 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyNucleic acid-binding proteins8052746 3000135 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyAlpha-L RNA-binding motif8052745 3001473 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052747 3000334 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibosomal protein S78095703 3000799 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AA [auth c]PF01667e6yalc1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
LA [auth k]PF04068,PF12837e6yalk2 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF04068,PF12837ECOD (1.6)
LA [auth k]PF00005e6yalk1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00005ECOD (1.6)
JPF01251e6yalJ1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
KPF01201e6yalK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
LPF00163,PF01479e6yalL1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
MPF03501e6yalM1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
NPF00366,PF16205e6yalN1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
OPF01248e6yalO1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
PPF08069e6yalP1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
PPF00312e6yalP2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
QPF00411e6yalQ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
R [auth S]PF00380e6yalS1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
S [auth T]PF00833e6yalT1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
B [auth l]PF05162e6yall1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
T [auth V]PF01090e6yalV1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
U [auth W]PF00338e6yalW1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
V [auth X]PF01249e6yalX1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
W [auth Y]PF00410e6yalY1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
W [auth Y]PF00410e6yalY2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
X [auth Z]PF00164e6yalZ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
Y [auth a]PF01282e6yala1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
Z [auth b]PF01283e6yalb1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
BA [auth d]PF01200e6yald1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
CA [auth e]PF00253e6yale1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
CPF00318e6yalC1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
DA [auth f]PF01599e6yalf1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
EA [auth g]PF00400e6yalg1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
FA [auth n]PF03297e6yaln1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
GA [auth i]PF04758e6yali1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
IA [auth A]PF00575e6yalA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00575ECOD (1.6)
IA [auth A]PF07541e6yalA1 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: PF07541ECOD (1.6)
IA [auth A]PF07541e6yalA3 A: a+b two layersX: Alpha-beta plaitsH: eIF-2-alpha, C-terminal domain (From Topology)T: eIF-2-alpha, C-terminal domainF: PF07541ECOD (1.6)
JA [auth B]PF03144e6yalB2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF03144ECOD (1.6)
JA [auth B]PF09173e6yalB4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: PF09173ECOD (1.6)
JA [auth B]PF00009e6yalB3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
JA [auth B]F_UNCLASSIFIEDe6yalB1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
KA [auth j]PF01176e6yalj1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01176ECOD (1.6)
MA [auth U]PF00416e6yalU1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
DPF01015e6yalD1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
DPF01015e6yalD2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
NA [auth R]PF00203e6yalR1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
EPF03719e6yalE1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
EPF00333e6yalE3 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
EPF00333e6yalE2 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
FPF00189e6yalF2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
FPF07650e6yalF1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
GPF00900e6yalG1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
GPF00467,PF16121e6yalG2 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
GPF00900,PF08071e6yalG3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF08071ECOD (1.6)
HPF00177e6yalH1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
IPF01092e6yalI1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
AA [auth c]2.20.25.100 Mainly Beta Single Sheet N-terminal domain of TfIIb Ribosomal protein S27CATH (utative)
K1.10.168.20 Mainly Alpha Orthogonal Bundle Phosducin domain 2CATH (utative)
M1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (utative)
P1.10.287.10 Mainly Alpha Orthogonal Bundle Helix Hairpins S15/NS1, RNA-bindingCATH (utative)
Q3.30.420.80 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (utative)
R [auth S]3.30.230.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (utative)
V [auth X]3.30.1230.20 Alpha Beta 2-Layer Sandwich Hypothetical Cytosolic Protein Chain: ACATH (utative)
W [auth Y]3.30.1370.30 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (utative)
W [auth Y]3.30.1490.10 Alpha Beta 2-Layer Sandwich Dna Ligase domain 1CATH (utative)
Y [auth a]3.30.70.3370 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
Z [auth b]3.30.1740.20 Alpha Beta 2-Layer Sandwich first zn-finger domain of poly(adp-ribose) polymerase-1 Ribosomal protein S26CATH (utative)
BA [auth d]2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (utative)
CA [auth e]4.10.830.10 Few Secondary Structures Irregular 30s Ribosomal Protein S14 Chain NCATH (utative)
C3.40.50.10490 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Glucose-6-phosphate isomerase like proteinCATH (utative)
EA [auth g]2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (utative)
FA [auth n]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (utative)
KA [auth j]2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
AA [auth c]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
LA [auth k]PF04068Possible Fer4-like domain in RNase L inhibitor, RLI (RLI)Possible Fer4-like domain in RNase L inhibitor, RLI- Family
LA [auth k]PF000374Fe-4S binding domain (Fer4)4Fe-4S binding domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.Domain
LA [auth k]PF00005ABC transporter (ABC_tran)ABC transporterABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.
Domain
PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
R [auth S]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
S [auth T]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
B [auth l]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
T [auth V]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
U [auth W]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
V [auth X]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
W [auth Y]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
X [auth Z]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
Y [auth a]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
Z [auth b]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
BA [auth d]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
CA [auth e]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
DA [auth f]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
EA [auth g]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
FA [auth n]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
GA [auth i]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
IA [auth A]PF07541Eukaryotic translation initiation factor 2 alpha subunit (EIF_2_alpha)Eukaryotic translation initiation factor 2 alpha subunit- Family
IA [auth A]PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.Domain
KA [auth j]PF01176Translation initiation factor 1A / IF-1 (eIF-1a)Translation initiation factor 1A / IF-1This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1.Domain
MA [auth U]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
NA [auth R]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
PF07650KH domain (KH_2)KH domain- Domain
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
PF00467KOW motif (KOW)KOW motif- Family
PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
AA [auth c]40S ribosomal protein eS27
LA [auth k]ATP-binding cassette sub-family E member 1 (ABCE1) -
A [auth 1]initiator methionylated tRNA---
40S ribosomal protein eS7
40S ribosomal protein eS8
40S ribosomal protein uS4
40S ribosomal protein eS10 -
40S ribosomal protein uS17
40S ribosomal protein eS12
40S ribosomal protein uS15
40S ribosomal protein uS11
R [auth S]40S ribosomal protein uS9
S [auth T]40S ribosomal protein eS17
B [auth l]60s ribosomal protein ul41
T [auth V]40S ribosomal protein eS19
U [auth W]40S ribosomal protein uS10
V [auth X]40S ribosomal protein eS21
W [auth Y]40S ribosomal protein uS8
X [auth Z]40S ribosomal protein uS12
Y [auth a]40S ribosomal protein eS24
Z [auth b]40S ribosomal protein eS26
BA [auth d]40S ribosomal protein eS28
CA [auth e]40S ribosomal protein uS14
40S ribosomal protein uS2
DA [auth f]40S ribosomal protein eS31
EA [auth g]ribosomal protein RACK1
FA [auth n]40S ribosomal protein eS25
GA [auth i]40S ribosomal protein eS30
HA [auth 2]18S ribosomal RNA---
IA [auth A]Eukaryotic translation initiation factor 2 subunit alpha -
JA [auth B]Eukaryotic translation initiation factor 2 subunit gamma---
KA [auth j]eukaryotic translation initiation factor 1A -
MA [auth U]40S ribosomal protein uS13
40S ribosomal protein eS1
NA [auth R]40S ribosomal protein uS19
OA [auth 3]beta-globin mRNA---
40S ribosomal protein uS5---
40S Ribosomal protein uS3
40S ribosomal protein eS4
40S Ribosomal protein uS7
40S ribosomal protein eS6

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
AA [auth c]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
AA [auth c]IPR000592Small ribosomal subunit protein eS27Family
AA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
LA [auth k]IPR007209RNase L inhibitor RLI-like, possible metal-binding domainDomain
LA [auth k]IPR017871ABC transporter-like, conserved siteConserved Site
LA [auth k]IPR003439ABC transporter-like, ATP-binding domainDomain
LA [auth k]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
LA [auth k]IPR003593AAA+ ATPase domainDomain
LA [auth k]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
LA [auth k]IPR013283RLI1Family
LA [auth k]IPR034348RLI, domain 1Domain
LA [auth k]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000554Small ribosomal subunit protein eS7Family
IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
IPR001047Small ribosomal subunit protein eS8Family
IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
IPR002942RNA-binding S4 domainDomain
IPR022801Small ribosomal subunit protein uS4Family
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR037447Small ribosomal subunit protein eS10Family
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR005326Plectin/eS10, N-terminalDomain
IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR000266Small ribosomal subunit protein uS17Family
IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
IPR000530Small ribosomal subunit protein eS12Family
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
IPR000589Small ribosomal subunit protein uS15Family
IPR001971Small ribosomal subunit protein uS11Family
IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
R [auth S]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
R [auth S]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
R [auth S]IPR000754Small ribosomal subunit protein uS9Family
R [auth S]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
S [auth T]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
S [auth T]IPR001210Small ribosomal subunit protein eS17Family
S [auth T]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
B [auth l]IPR007836Large ribosomal subunit protein eS32Family
T [auth V]IPR001266Small ribosomal subunit protein eS19Family
T [auth V]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
T [auth V]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
T [auth V]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
U [auth W]IPR001848Small ribosomal subunit protein uS10Family
U [auth W]IPR027486Small ribosomal subunit protein uS10 domainDomain
U [auth W]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
U [auth W]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
U [auth W]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
V [auth X]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
V [auth X]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
V [auth X]IPR001931Small ribosomal subunit protein eS21Family
W [auth Y]IPR000630Small ribosomal subunit protein uS8Family
W [auth Y]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
W [auth Y]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
X [auth Z]IPR006032Small ribosomal subunit protein uS12Family
X [auth Z]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
X [auth Z]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
Y [auth a]IPR001976Small ribosomal subunit protein eS24Family
Y [auth a]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Y [auth a]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
Z [auth b]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
Z [auth b]IPR000892Small ribosomal subunit protein eS26Family
Z [auth b]IPR047864Ribosomal protein eS26, conserved siteConserved Site
BA [auth d]IPR028626Ribosomal protein eS28 conserved siteConserved Site
BA [auth d]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BA [auth d]IPR000289Small ribosomal subunit protein eS28Family
CA [auth e]IPR001209Small ribosomal subunit protein uS14Family
CA [auth e]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
CA [auth e]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
CA [auth e]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IPR001865Small ribosomal subunit protein uS2Family
IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
DA [auth f]IPR019954Ubiquitin conserved siteConserved Site
DA [auth f]IPR000626Ubiquitin-like domainDomain
DA [auth f]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
DA [auth f]IPR002906Small ribosomal subunit protein eS31Domain
DA [auth f]IPR019956Ubiquitin domainDomain
DA [auth f]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
DA [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth g]IPR019775WD40 repeat, conserved siteConserved Site
EA [auth g]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EA [auth g]IPR045223Small ribosomal subunit protein RACK1-likeFamily
EA [auth g]IPR001680WD40 repeatRepeat
EA [auth g]IPR020472G-protein beta WD-40 repeatRepeat
EA [auth g]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
FA [auth n]IPR004977Small ribosomal subunit protein eS25Family
FA [auth n]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
GA [auth i]IPR039415Ubiquitin-like protein FUBIDomain
GA [auth i]IPR019956Ubiquitin domainDomain
GA [auth i]IPR019954Ubiquitin conserved siteConserved Site
GA [auth i]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
GA [auth i]IPR000626Ubiquitin-like domainDomain
GA [auth i]IPR006846Small ribosomal subunit protein eS30Family
IA [auth A]IPR003029S1 domainDomain
IA [auth A]IPR044126IF2a, S1-like domainDomain
IA [auth A]IPR024054Translation initiation factor 2, alpha subunit, middle domain superfamilyHomologous Superfamily
IA [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IA [auth A]IPR024055Translation initiation factor 2, alpha subunit, C-terminalHomologous Superfamily
IA [auth A]IPR011488Translation initiation factor 2, alpha subunitFamily
KA [auth j]IPR018104Translation initiation factor 1A (eIF-1A), conserved siteConserved Site
KA [auth j]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
KA [auth j]IPR006196RNA-binding domain, S1, IF1 typeDomain
KA [auth j]IPR001253Translation initiation factor 1A (eIF-1A)Family
MA [auth U]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
MA [auth U]IPR001892Small ribosomal subunit protein uS13Family
MA [auth U]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
MA [auth U]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
IPR001593Small ribosomal subunit protein eS1Family
IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
NA [auth R]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
NA [auth R]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
NA [auth R]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
NA [auth R]IPR002222Small ribosomal subunit protein uS19Family
IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IPR004044K Homology domain, type 2Domain
IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
IPR002942RNA-binding S4 domainDomain
IPR013845Small ribosomal subunit protein eS4, central regionDomain
IPR000876Small ribosomal subunit protein eS4Family
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR005824KOWDomain
IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
IPR000235Small ribosomal subunit protein uS7Family
IPR023798Small ribosomal subunit protein uS7 domainDomain
IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
IPR014401Small ribosomal subunit protein eS6-likeFamily
IPR001377Small ribosomal subunit protein eS6Family
IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site