Annotations: 6YAC

Plant PSI-ferredoxin supercomplex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6yacb_	Membrane and cell surface proteins and peptides	Photosystem I subunits PsaA/PsaB	Photosystem I subunits PsaA/PsaB	Photosystem I subunits PsaA/PsaB	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
F	d6yacf_	Membrane and cell surface proteins and peptides	Single transmembrane helix	Subunit III of photosystem I reaction centre, PsaF	automated matches	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
N [auth 2]	d6yac2_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	automated matches	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
O [auth 3]	d6yac3_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	automated matches	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
P [auth 4]	d6yac4_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	automated matches	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
Q [auth N]	d6yacn_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	2Fe-2S ferredoxin-like	2Fe-2S ferredoxin-related	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
E	d6yace1	All beta proteins	SH3-like barrel	Electron transport accessory proteins	automated matches	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
E	d6yace2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
D	d6yacd_	Alpha and beta proteins (a+b)	Photosystem I subunit PsaD	Photosystem I subunit PsaD	Photosystem I subunit PsaD	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
C	d6yacc_	Alpha and beta proteins (a+b)	Ferredoxin-like	4Fe-4S ferredoxins	7-Fe ferredoxin	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
M [auth 1]	d6yac1_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	automated matches	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
L	d6yacl_	Membrane and cell surface proteins and peptides	Photosystem I reaction center subunit XI, PsaL	Photosystem I reaction center subunit XI, PsaL	automated matches	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
J	d6yacj_	Membrane and cell surface proteins and peptides	Single transmembrane helix	Subunit IX of photosystem I reaction centre, PsaJ	automated matches	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)
A	d6yaca_	Membrane and cell surface proteins and peptides	Photosystem I subunits PsaA/PsaB	Photosystem I subunits PsaA/PsaB	Photosystem I subunits PsaA/PsaB	automated matches	(Lathyrus oleraceus ) [TaxId: 3888 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Q [auth N]	SCOP2 Family	2Fe-2S ferredoxin-related	8098325	4000982	SCOP2 (2022-06-29)
Q [auth N]	SCOP2 Superfamily	2Fe-2S ferredoxin-like	8098326	3000113	SCOP2 (2022-06-29)
A	SCOP2 Family	Photosystem I subunits PsaA/PsaB	8096179	4002118	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Photosystem I subunits PsaA/PsaB	8096180	3000850	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SpoU_methylase	e6yacB1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
F	SpoU_methylase	e6yacF1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
I	SpoU_methylase	e6yacI1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
K	SpoU_methylase	e6yacK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
N [auth 2]	SpoU_methylase	e6yac21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
O [auth 3]	SpoU_methylase	e6yac31	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
P [auth 4]	SpoU_methylase	e6yac41	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
Q [auth N]	SpoU_methylase	e6yacN1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
H	SpoU_methylase	e6yacH1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
G	SpoU_methylase	e6yacG1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
E	SpoU_methylase	e6yacE1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
D	SpoU_methylase	e6yacD1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
C	SpoU_methylase	e6yacC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
M [auth 1]	SpoU_methylase	e6yac11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
L	SpoU_methylase	e6yacL1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
J	SpoU_methylase	e6yacJ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
A	SpoU_methylase	e6yacA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
N [auth 2]	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (utative)
O [auth 3]	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (utative)
P [auth 4]	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (utative)
M [auth 1]	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (utative)
L	1.20.1240.10	Mainly Alpha	Up-down Bundle	Photosystem 1 Reaction Centre Subunit Xi	Chain: L	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Photosystem I P700 chlorophyll a apoprotein A2	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding electron transfer activity	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
F	PsaF	-	-	-
I	Photosystem I reaction center subunit VIII	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
K	Photosystem I reaction center subunit X psaK	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
N [auth 2]	Chlorophyll a-b binding protein, chloroplastic	-	photosynthesis, light harvesting in photosystem I photosynthesis photosynthesis, light reaction photosynthesis, light harvesting metabolic process cellular process generation of precursor metabolites and energy	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane
O [auth 3]	Chlorophyll a-b binding protein 3, chloroplastic	-	photosynthesis photosynthesis, light reaction photosynthesis, light harvesting metabolic process cellular process generation of precursor metabolites and energy	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane
P [auth 4]	Chlorophyll a-b binding protein P4, chloroplastic	-	photosynthesis, light harvesting in photosystem I photosynthesis photosynthesis, light reaction photosynthesis, light harvesting metabolic process cellular process generation of precursor metabolites and energy	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane
Q [auth N]	Ferredoxin-1, chloroplastic	iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding electron transfer activity	electron transport chain metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular anatomical structure plastid intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure plastid stroma organelle chloroplast stroma cytoplasm chloroplast
H	PsaH	-	-	-
G	PsaG	-	-	-
E	PsaE	-	-	-
D	PsaD	-	-	-
C	Photosystem I iron-sulfur center	iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding electron transfer activity	photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain metabolic process cellular process generation of precursor metabolites and energy photosynthetic electron transport in photosystem I	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
M [auth 1]	Lhca1	-	-	-
L	PsaL	-	-	-
J	Photosystem I reaction center subunit IX	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex photosystem photosystem I membrane protein complex
A	Photosystem I P700 chlorophyll a apoprotein A1	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding electron transfer activity	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR036408	Photosystem I PsaA/PsaB superfamily	Homologous Superfamily
B	IPR001280	Photosystem I PsaA/PsaB	Family
B	IPR006244	Photosystem I PsaB	Family
B	IPR020586	Photosystem I PsaA/PsaB, conserved site	Conserved Site
I	IPR036357	Photosystem I reaction centre subunit VIII superfamily	Homologous Superfamily
I	IPR001302	Photosystem I reaction centre subunit VIII	Family
K	IPR023618	Photosystem I PsaG/PsaK domain, chloroplastic	Homologous Superfamily
K	IPR016370	Photosystem I reaction center subunit V/PsaK, plant	Family
K	IPR000549	Photosystem I reaction center subunit V/PsaK	Family
K	IPR035982	Photosystem I reaction centre subunit PsaK superfamily	Homologous Superfamily
K	IPR017493	Photosystem I reaction center subunit psaK, plant	Family
N [auth 2]	IPR001344	Chlorophyll A-B binding protein, plant and chromista	Family
N [auth 2]	IPR022796	Chlorophyll A-B binding protein	Family
O [auth 3]	IPR001344	Chlorophyll A-B binding protein, plant and chromista	Family
O [auth 3]	IPR022796	Chlorophyll A-B binding protein	Family
P [auth 4]	IPR001344	Chlorophyll A-B binding protein, plant and chromista	Family
P [auth 4]	IPR022796	Chlorophyll A-B binding protein	Family
Q [auth N]	IPR010241	Ferredoxin [2Fe-2S], plant and bacteria	Domain
Q [auth N]	IPR036010	2Fe-2S ferredoxin-like superfamily	Homologous Superfamily
Q [auth N]	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	Domain
Q [auth N]	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
Q [auth N]	IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	Binding Site
C	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
C	IPR050157	Photosystem I iron-sulfur center	Family
C	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
C	IPR017491	Photosystem I protein PsaC	Family
J	IPR002615	Photosystem I PsaJ, reaction centre subunit IX	Family
J	IPR036062	Photosystem I PsaJ, reaction centre subunit IX superfamily	Homologous Superfamily
A	IPR006243	Photosystem I PsaA	Family
A	IPR036408	Photosystem I PsaA/PsaB superfamily	Homologous Superfamily
A	IPR001280	Photosystem I PsaA/PsaB	Family
A	IPR020586	Photosystem I PsaA/PsaB, conserved site	Conserved Site

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, I, J A, B, C, I, J, K, N [auth 2], O [auth 3], P [auth 4], Q [auth N]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, I, J A, B, C, I, J, K, N [auth 2], O [auth 3], P [auth 4], Q [auth N]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, I, J A, B, C, I, J, K, N [auth 2], O [auth 3], P [auth 4], Q [auth N]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Photosystems	Photosystem I + ferredoxin supercomplex