6Y97
Structure of full-length CD20 in complex with Obinutuzumab Fab
External Resource: Annotation
- Domain Annotation: ECOD Classification
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Thera-SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth H] | PF07686 | e6y97H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D [auth L] | PF07686 | e6y97L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth H] | - | VH | Homo sapiens (human) | IGHV1-69*08, IGHJ4*01, IGHJ4*02, IGHJ4*03 | V-DOMAIN VH | IG | (VH) | IMGT (202428-2) |
D [auth L] | - | V-KAPPA | Homo sapiens (human) | IGKV2D-29*02, IGKJ4*01, IGKJ4*02 | V-DOMAIN V-KAPPA | IG | (VH) | IMGT (202428-2) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth H] | Heavy Chain | IGHV1 | - | b-lymphocyte antigen cd20 | b-lymphocyte antigen cd20 | SAbDab (2024-07-12) |
D [auth L] | Light Chain | IGKV2 | Kappa | b-lymphocyte antigen cd20 | b-lymphocyte antigen cd20 | SAbDab (2024-07-12) |
Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage
Chain | Name | Target | Provenance Source |
---|---|---|---|
C [auth H] | Obinutuzumab | MS4A1/CD20 | Therapeutic SAbDab (2024-07-12) |
D [auth L] | Obinutuzumab | MS4A1/CD20 | Therapeutic SAbDab (2024-07-12) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04103 | CD20-like family (CD20) | CD20-like family | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR030417 | Membrane-spanning 4-domains subfamily A | Family | |
IPR007237 | CD20-like family | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | CD20 Ca2+ channel |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |