6XQI
Structure of HIV-1 Vpr in complex with the human nucleotide excision repair protein hHR23A
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth F] | SCOP2B Superfamily | UBA-like | 8037710 | 3001235 | SCOP2B (2021-05-27) |
F [auth G] | SCOP2B Superfamily | UBA-like | 8037710 | 3001235 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00522 | e6xqiA1 | A: alpha bundles | X: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | H: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | T: Viral accessory protein x (Vpx) / viral protein r (Vpr) | F: PF00522 | ECOD (1.6) |
B | PF00522 | e6xqiB1 | A: alpha bundles | X: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | H: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | T: Viral accessory protein x (Vpx) / viral protein r (Vpr) | F: PF00522 | ECOD (1.6) |
C | PF00522 | e6xqiC1 | A: alpha bundles | X: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | H: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | T: Viral accessory protein x (Vpx) / viral protein r (Vpr) | F: PF00522 | ECOD (1.6) |
D | PF00522 | e6xqiD1 | A: alpha bundles | X: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | H: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | T: Viral accessory protein x (Vpx) / viral protein r (Vpr) | F: PF00522 | ECOD (1.6) |
E [auth F] | PF00627 | e6xqiF1 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: PF00627 | ECOD (1.6) |
F [auth G] | PF00627 | e6xqiG1 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: PF00627 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00522 | VPR/VPX protein (VPR) | VPR/VPX protein | - | Family | |
E [auth F], F [auth G] | PF00627 | UBA/TS-N domain (UBA) | UBA/TS-N domain | This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin a ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000012 | Retroviral VpR/VpX protein | Family | |
E [auth F], F [auth G] | IPR004806 | UV excision repair protein Rad23 | Family |
E [auth F], F [auth G] | IPR036353 | XPC-binding domain superfamily | Homologous Superfamily |
E [auth F], F [auth G] | IPR015360 | XPC-binding domain | Domain |
E [auth F], F [auth G] | IPR015940 | Ubiquitin-associated domain | Domain |
E [auth F], F [auth G] | IPR041811 | RAD23A/RAD23B, UBA1 domain | Domain |
E [auth F], F [auth G] | IPR000626 | Ubiquitin-like domain | Domain |
E [auth F], F [auth G] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
E [auth F], F [auth G] | IPR009060 | UBA-like superfamily | Homologous Superfamily |
E [auth F], F [auth G] | IPR006636 | Heat shock chaperonin-binding | Domain |