6XDK
Crystal structure of Phosphoserine aminotransferase (SerC) from Stenotrophomonas maltophilia K279a
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6xdka_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Stenotrophomonas maltophilia K279a ) [TaxId: 522373 ], | SCOPe (2.08) |
B | d6xdkb_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Stenotrophomonas maltophilia K279a ) [TaxId: 522373 ], | SCOPe (2.08) |
C | d6xdkc_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Stenotrophomonas maltophilia K279a ) [TaxId: 522373 ], | SCOPe (2.08) |
D | d6xdkd_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Stenotrophomonas maltophilia K279a ) [TaxId: 522373 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PLP-dependent transferases | 8094150 | 3000954 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PLP-dependent transferases | 8094150 | 3000954 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PLP-dependent transferases | 8094150 | 3000954 | SCOP2B (2022-06-29) |
D | SCOP2 Family | GABA-aminotransferase-like | 8094149 | 4000675 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | PLP-dependent transferases | 8094150 | 3000954 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Aminotran_5_C_1 | e6xdkA2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_5_C_1 | ECOD (1.6) |
A | UNK_F_TYPE | e6xdkA1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: UNK_F_TYPE | ECOD (1.6) |
B | Aminotran_5_C_1 | e6xdkB2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_5_C_1 | ECOD (1.6) |
B | UNK_F_TYPE | e6xdkB1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: UNK_F_TYPE | ECOD (1.6) |
C | Aminotran_5_C_1 | e6xdkC2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_5_C_1 | ECOD (1.6) |
C | UNK_F_TYPE | e6xdkC1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: UNK_F_TYPE | ECOD (1.6) |
D | Aminotran_5_C_1 | e6xdkD2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_5_C_1 | ECOD (1.6) |
D | UNK_F_TYPE | e6xdkD1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: UNK_F_TYPE | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020578 | Aminotransferase class-V, pyridoxal-phosphate binding site | Binding Site | |
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily | |
IPR000192 | Aminotransferase class V domain | Domain | |
IPR022278 | Phosphoserine aminotransferase | Family |