6X9R
HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293F cells in complex with RM20A3 Fab
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth H] | d6x9rh_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Rhesus monkey (Macaca mulatta ) [TaxId: 9544 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GP120_2nd | e6x9rA1 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
A | GP120_3rd | e6x9rA3 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
A | GP120_1st | e6x9rA2 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
B | GP41_1st | e6x9rB1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
C [auth H] | V-set_12 | e6x9rH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
D [auth L] | V-set_3 | e6x9rL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth H] | Fv RM20A3, anti-gp41 [HIV-1], neutralizing | VH | Homo sapiens (human) | IGHV3-23*04, IGHJ4*01, IGHJ4*02, IGHJ4*03 | V-DOMAIN VH | IG | FV-HEAVY_LAMBDA | IMGT (202440-0) |
D [auth L] | Fv RM20A3, anti-gp41 [HIV-1], neutralizing | L-LAMBDA | Homo sapiens (human) | IGLV2-11*01, IGLV2-11*02, IGLJ2*01, IGLJ3*02, IGLJ7*01, IGLJ3*01, IGLC1*02, IGLL5*02, IGLL5*01 | V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA | IG | FV-HEAVY_LAMBDA | IMGT (202440-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth H] | Heavy Chain | IGHV3 | - | hiv-1 envelope glycoprotein bg505 sosip.664 gp120 | hiv-1 envelope glycoprotein bg505 sosip.664 gp41 | SAbDab (2024-10-11) |
D [auth L] | Light Chain | IGLV2 | Lambda | hiv-1 envelope glycoprotein bg505 sosip.664 gp120 | hiv-1 envelope glycoprotein bg505 sosip.664 gp41 | SAbDab (2024-10-11) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00516 | Envelope glycoprotein GP120 (GP120) | Envelope glycoprotein GP120 | - | Family | |
PF00517 | Retroviral envelope protein (GP41) | Retroviral envelope protein | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain | |
IPR036377 | Gp120 core superfamily | Homologous Superfamily | |
IPR000328 | Retroviral envelope protein GP41-like | Domain | |
IPR037527 | Envelope glycoprotein Gp160 | Family | |
IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain | |
IPR036377 | Gp120 core superfamily | Homologous Superfamily | |
IPR000328 | Retroviral envelope protein GP41-like | Domain | |
IPR037527 | Envelope glycoprotein Gp160 | Family |