Annotations: 6X8J

Caspase-7 in complex with ketomethylene inhibitor reveals tetrahedral adduct

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	RNA_pol_Rpb1_5	e6x8jD1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (v294.2)
B [auth C]	HD_4	e6x8jC1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: HD_4	ECOD (v294.2)
C [auth B]	RNA_pol_Rpb1_5	e6x8jB1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (v294.2)
A	HD_4	e6x8jA1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: HD_4	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B]	PF00656	Caspase domain (Peptidase_C14)	Caspase domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F	ketomethylene inhibitor	-	-	-
B [auth C], D	Caspase-7	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cysteine-type peptidase activity cysteine-type endopeptidase activity endopeptidase activity RNA binding binding nucleic acid binding aspartic-type peptidase activity aspartic-type endopeptidase activity	developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development ceramide metabolic process sphingolipid biosynthetic process biosynthetic process ceramide biosynthetic process lipid biosynthetic process sphingolipid metabolic process developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development ceramide metabolic process sphingolipid biosynthetic process biosynthetic process ceramide biosynthetic process lipid biosynthetic process sphingolipid metabolic process primary metabolic process metabolic process cellular process lipid metabolic process apoptotic process cell death programmed cell death catabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process regulation of biological process neuron apoptotic process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death positive regulation of apoptotic process positive regulation of neuron apoptotic process positive regulation of cellular process regulation of neuron apoptotic process cellular response to stimulus biological process involved in interspecies interaction between organisms response to lipid response to stimulus response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to chemical response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin lymphocyte apoptotic process leukocyte apoptotic process execution phase of apoptosis gene expression macromolecule biosynthetic process protein maturation proteolysis protein processing defense response to bacterium defense response response to stress fibroblast apoptotic process cellular response to nitrogen compound cellular response to staurosporine response to staurosporine response to nitrogen compound response to alkaloid cellular response to alkaloid membrane organization wound healing regulation of cellular component organization positive regulation of cellular component organization plasma membrane repair cellular component organization regulation of plasma membrane organization plasma membrane organization regulation of plasma membrane repair cellular component organization or biogenesis positive regulation of plasma membrane repair response to wounding endomembrane system organization response to light stimulus response to radiation response to abiotic stimulus response to UV muscle structure development cellular developmental process cell differentiation striated muscle cell differentiation muscle cell differentiation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle nucleolus fibrillar center membraneless organelle
A, C [auth B]	Caspase-7	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cysteine-type peptidase activity cysteine-type endopeptidase activity endopeptidase activity RNA binding binding nucleic acid binding aspartic-type peptidase activity aspartic-type endopeptidase activity	developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development ceramide metabolic process sphingolipid biosynthetic process biosynthetic process ceramide biosynthetic process lipid biosynthetic process sphingolipid metabolic process developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development ceramide metabolic process sphingolipid biosynthetic process biosynthetic process ceramide biosynthetic process lipid biosynthetic process sphingolipid metabolic process primary metabolic process metabolic process cellular process lipid metabolic process apoptotic process cell death programmed cell death catabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process regulation of biological process neuron apoptotic process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death positive regulation of apoptotic process positive regulation of neuron apoptotic process positive regulation of cellular process regulation of neuron apoptotic process cellular response to stimulus biological process involved in interspecies interaction between organisms response to lipid response to stimulus response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to chemical response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin lymphocyte apoptotic process leukocyte apoptotic process execution phase of apoptosis gene expression macromolecule biosynthetic process protein maturation proteolysis protein processing defense response to bacterium defense response response to stress fibroblast apoptotic process cellular response to nitrogen compound cellular response to staurosporine response to staurosporine response to nitrogen compound response to alkaloid cellular response to alkaloid membrane organization wound healing regulation of cellular component organization positive regulation of cellular component organization plasma membrane repair cellular component organization regulation of plasma membrane organization plasma membrane organization regulation of plasma membrane repair cellular component organization or biogenesis positive regulation of plasma membrane repair response to wounding endomembrane system organization response to light stimulus response to radiation response to abiotic stimulus response to UV muscle structure development cellular developmental process cell differentiation striated muscle cell differentiation muscle cell differentiation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle nucleolus fibrillar center membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C], D	IPR001309	Peptidase C14, p20 domain	Domain
B [auth C], D	IPR011600	Peptidase C14, caspase domain	Domain
B [auth C], D	IPR016129	Peptidase family C14A, His active site	Active Site
B [auth C], D	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
B [auth C], D	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
B [auth C], D	IPR033139	Peptidase family C14A, cysteine active site	Active Site
B [auth C], D	IPR002138	Peptidase C14, caspase non-catalytic subunit p10	Domain
B [auth C], D	IPR002398	Peptidase C14 family	Family
A, C [auth B]	IPR001309	Peptidase C14, p20 domain	Domain
A, C [auth B]	IPR011600	Peptidase C14, caspase domain	Domain
A, C [auth B]	IPR016129	Peptidase family C14A, His active site	Active Site
A, C [auth B]	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
A, C [auth B]	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
A, C [auth B]	IPR033139	Peptidase family C14A, cysteine active site	Active Site
A, C [auth B]	IPR002138	Peptidase C14, caspase non-catalytic subunit p10	Domain
A, C [auth B]	IPR002398	Peptidase C14 family	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth C], D	: P55210	vitiligo acute myeloid leukemia breast carcinoma Myocardial Reperfusion Injury pancreatic intraductal papillary-mucinous carcinoma attention deficit hyperactivity disorder, inattentive type juvenile dermatomyositis lung carcinoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm Barrett esophagus cancer large cell medulloblastoma malignant colon neoplasm psoriasis vitiligo acute myeloid leukemia breast carcinoma Myocardial Reperfusion Injury pancreatic intraductal papillary-mucinous carcinoma attention deficit hyperactivity disorder, inattentive type juvenile dermatomyositis lung carcinoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm Barrett esophagus cancer large cell medulloblastoma malignant colon neoplasm psoriasis breast cancer esophageal adenocarcinoma malignant glioma
A, C [auth B]	: P55210	vitiligo acute myeloid leukemia breast carcinoma Myocardial Reperfusion Injury pancreatic intraductal papillary-mucinous carcinoma attention deficit hyperactivity disorder, inattentive type juvenile dermatomyositis lung carcinoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm Barrett esophagus cancer large cell medulloblastoma malignant colon neoplasm psoriasis vitiligo acute myeloid leukemia breast carcinoma Myocardial Reperfusion Injury pancreatic intraductal papillary-mucinous carcinoma attention deficit hyperactivity disorder, inattentive type juvenile dermatomyositis lung carcinoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm Barrett esophagus cancer large cell medulloblastoma malignant colon neoplasm psoriasis breast cancer esophageal adenocarcinoma malignant glioma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
E, F	ACE	: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359
E, F	Y2Y	: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.