6WU6
succinate-coenzyme Q reductase
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth F] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8017659 | 3000113 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | alpha-helical ferredoxin | 8017662 | 3000026 | SCOP2B (2022-06-29) |
G [auth J] | SCOP2B Superfamily | alpha-helical ferredoxin | 8017662 | 3000026 | SCOP2B (2022-06-29) |
G [auth J] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8017659 | 3000113 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8017659 | 3000113 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | alpha-helical ferredoxin | 8017662 | 3000026 | SCOP2B (2022-06-29) |
E [auth G] | SCOP2B Superfamily | Fumarate reductase respiratory complex transmembrane subunits | 8043765 | 3000518 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Fumarate reductase respiratory complex transmembrane subunits | 8043765 | 3000518 | SCOP2B (2022-06-29) |
H [auth K] | SCOP2B Superfamily | Fumarate reductase respiratory complex transmembrane subunits | 8043765 | 3000518 | SCOP2B (2022-06-29) |
I [auth L] | SCOP2 Family | Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) | 8102514 | 4001916 | SCOP2 (2022-06-29) |
I [auth L] | SCOP2 Superfamily | Fumarate reductase respiratory complex transmembrane subunits | 8102515 | 3000518 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth F] | Fer4_8 | e6wu6F1 | A: alpha arrays | X: alpha-helical ferredoxin-like | H: alpha-helical ferredoxin (From Topology) | T: alpha-helical ferredoxin | F: Fer4_8 | ECOD (1.6) |
D [auth F] | Fer2_3 | e6wu6F2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_3 | ECOD (1.6) |
G [auth J] | Fer4_8 | e6wu6J2 | A: alpha arrays | X: alpha-helical ferredoxin-like | H: alpha-helical ferredoxin (From Topology) | T: alpha-helical ferredoxin | F: Fer4_8 | ECOD (1.6) |
G [auth J] | Fer2_3 | e6wu6J1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_3 | ECOD (1.6) |
A [auth B] | Fer4_8 | e6wu6B1 | A: alpha arrays | X: alpha-helical ferredoxin-like | H: alpha-helical ferredoxin (From Topology) | T: alpha-helical ferredoxin | F: Fer4_8 | ECOD (1.6) |
A [auth B] | Fer2_3 | e6wu6B2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_3 | ECOD (1.6) |
E [auth G] | Sdh_cyt | e6wu6G1 | A: alpha bundles | X: Transmembrane heme-binding four-helical bundle (From Homology) | H: Transmembrane heme-binding four-helical bundle | T: Fumarate reductase respiratory complex transmembrane subunits | F: Sdh_cyt | ECOD (1.6) |
B [auth C] | Sdh_cyt | e6wu6C1 | A: alpha bundles | X: Transmembrane heme-binding four-helical bundle (From Homology) | H: Transmembrane heme-binding four-helical bundle | T: Fumarate reductase respiratory complex transmembrane subunits | F: Sdh_cyt | ECOD (1.6) |
H [auth K] | Sdh_cyt | e6wu6K1 | A: alpha bundles | X: Transmembrane heme-binding four-helical bundle (From Homology) | H: Transmembrane heme-binding four-helical bundle | T: Fumarate reductase respiratory complex transmembrane subunits | F: Sdh_cyt | ECOD (1.6) |
C [auth D] | Sdh_cyt_1 | e6wu6D1 | A: alpha bundles | X: Transmembrane heme-binding four-helical bundle (From Homology) | H: Transmembrane heme-binding four-helical bundle | T: Fumarate reductase respiratory complex transmembrane subunits | F: Sdh_cyt_1 | ECOD (1.6) |
F [auth H] | Sdh_cyt_1 | e6wu6H1 | A: alpha bundles | X: Transmembrane heme-binding four-helical bundle (From Homology) | H: Transmembrane heme-binding four-helical bundle | T: Fumarate reductase respiratory complex transmembrane subunits | F: Sdh_cyt_1 | ECOD (1.6) |
I [auth L] | Sdh_cyt_1 | e6wu6L1 | A: alpha bundles | X: Transmembrane heme-binding four-helical bundle (From Homology) | H: Transmembrane heme-binding four-helical bundle | T: Fumarate reductase respiratory complex transmembrane subunits | F: Sdh_cyt_1 | ECOD (1.6) |
J [auth A] | Succ_DH_flav_C | e6wu6A2 | A: alpha bundles | X: Spectrin repeat-like | H: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain (From Topology) | T: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain | F: Succ_DH_flav_C | ECOD (1.6) |
J [auth A] | FAD_binding_3_1st | e6wu6A1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: FAD_binding_3_1st | ECOD (1.6) |
K [auth E] | Succ_DH_flav_C | e6wu6E2 | A: alpha bundles | X: Spectrin repeat-like | H: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain (From Topology) | T: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain | F: Succ_DH_flav_C | ECOD (1.6) |
K [auth E] | FAD_binding_3_1st | e6wu6E1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: FAD_binding_3_1st | ECOD (1.6) |
L [auth I] | Succ_DH_flav_C | e6wu6I2 | A: alpha bundles | X: Spectrin repeat-like | H: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain (From Topology) | T: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain | F: Succ_DH_flav_C | ECOD (1.6) |
L [auth I] | FAD_binding_3_1st | e6wu6I1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: FAD_binding_3_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], D [auth F], G [auth J] | PF13085 | 2Fe-2S iron-sulfur cluster binding domain (Fer2_3) | 2Fe-2S iron-sulfur cluster binding domain | The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which abeta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. | Domain |
A [auth B], D [auth F], G [auth J] | PF13534 | 4Fe-4S dicluster domain (Fer4_17) | 4Fe-4S dicluster domain | This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex II superfamily | Succinate dehydrogenase/fumarate reductase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |