6WKV | pdb_00006wkv

Cryo-EM structure of engineered variant of the Encapsulin from Thermotoga maritima (TmE)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth p]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
YA [auth o]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
XA [auth n]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
WA [auth m]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
VA [auth l]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
UA [auth k]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
TA [auth j]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
SA [auth i]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
RA [auth h]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
QA [auth g]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
PA [auth f]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
OA [auth e]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
NA [auth d]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
MA [auth c]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
LA [auth b]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
KA [auth a]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
JA [auth 9]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
IA [auth 8]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
HB [auth x]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
HA [auth 7]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
GB [auth w]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
GA [auth 6]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
FB [auth v]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
FA [auth 5]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
EB [auth u]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
EA [auth 4]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
DB [auth t]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
DA [auth 3]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
CB [auth s]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
CA [auth 2]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
BB [auth r]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
BA [auth 1]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
AB [auth q]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
AA [auth 0]	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Phage coat protein-like	8054151	3001529	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth p]	Raptor_N	e6wkvp1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
Z	Raptor_N	e6wkvZ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
YA [auth o]	Raptor_N	e6wkvo1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
Y	Raptor_N	e6wkvY1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
XA [auth n]	Raptor_N	e6wkvn1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
X	Raptor_N	e6wkvX1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
WA [auth m]	Raptor_N	e6wkvm1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
W	Raptor_N	e6wkvW1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
VA [auth l]	Raptor_N	e6wkvl1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
V	Raptor_N	e6wkvV1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
UA [auth k]	Raptor_N	e6wkvk1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
U	Raptor_N	e6wkvU1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
TA [auth j]	Raptor_N	e6wkvj1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
T	Raptor_N	e6wkvT1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
SA [auth i]	Raptor_N	e6wkvi1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
S	Raptor_N	e6wkvS1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
RA [auth h]	Raptor_N	e6wkvh1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
R	Raptor_N	e6wkvR1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
QA [auth g]	Raptor_N	e6wkvg1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
Q	Raptor_N	e6wkvQ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
PA [auth f]	Raptor_N	e6wkvf1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
P	Raptor_N	e6wkvP1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
OA [auth e]	Raptor_N	e6wkve1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
O	Raptor_N	e6wkvO1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
NA [auth d]	Raptor_N	e6wkvd1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
N	Raptor_N	e6wkvN1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
MA [auth c]	Raptor_N	e6wkvc1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
M	Raptor_N	e6wkvM1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
LA [auth b]	Raptor_N	e6wkvb1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
L	Raptor_N	e6wkvL1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
KA [auth a]	Raptor_N	e6wkva1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
K	Raptor_N	e6wkvK1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
JA [auth 9]	Raptor_N	e6wkv91	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
J	Raptor_N	e6wkvJ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
IA [auth 8]	Raptor_N	e6wkv81	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
I	Raptor_N	e6wkvI1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
HB [auth x]	Raptor_N	e6wkvx1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
HA [auth 7]	Raptor_N	e6wkv71	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
H	Raptor_N	e6wkvH1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
GB [auth w]	Raptor_N	e6wkvw1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
GA [auth 6]	Raptor_N	e6wkv61	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
G	Raptor_N	e6wkvG1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
FB [auth v]	Raptor_N	e6wkvv1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
FA [auth 5]	Raptor_N	e6wkv51	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
F	Raptor_N	e6wkvF1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
EB [auth u]	Raptor_N	e6wkvu1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
EA [auth 4]	Raptor_N	e6wkv41	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
E	Raptor_N	e6wkvE1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
DB [auth t]	Raptor_N	e6wkvt1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
DA [auth 3]	Raptor_N	e6wkv31	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
D	Raptor_N	e6wkvD1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
CB [auth s]	Raptor_N	e6wkvs1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
CA [auth 2]	Raptor_N	e6wkv21	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
C	Raptor_N	e6wkvC1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
BB [auth r]	Raptor_N	e6wkvr1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
BA [auth 1]	Raptor_N	e6wkv11	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
B	Raptor_N	e6wkvB1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
AB [auth q]	Raptor_N	e6wkvq1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
AA [auth 0]	Raptor_N	e6wkv01	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
A	Hydantoinase_B	e6wkvA1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Hydantoinase_B	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth 0], AB [auth q], B, BA [auth 1], A, AA [auth 0], AB [auth q], B, BA [auth 1], BB [auth r], C, CA [auth 2], CB [auth s], D, DA [auth 3], DB [auth t], E, EA [auth 4], EB [auth u], F, FA [auth 5], FB [auth v], G, GA [auth 6], GB [auth w], H, HA [auth 7], HB [auth x], I, IA [auth 8], J, JA [auth 9], K, KA [auth a], L, LA [auth b], M, MA [auth c], N, NA [auth d], O, OA [auth e], P, PA [auth f], Q, QA [auth g], R, RA [auth h], S, SA [auth i], T, TA [auth j], U, UA [auth k], V, VA [auth l], W, WA [auth m], X, XA [auth n], Y, YA [auth o], Z, ZA [auth p]	Encapsulin	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth 0], AB [auth q], B, BA [auth 1], A, AA [auth 0], AB [auth q], B, BA [auth 1], BB [auth r], C, CA [auth 2], CB [auth s], D, DA [auth 3], DB [auth t], E, EA [auth 4], EB [auth u], F, FA [auth 5], FB [auth v], G, GA [auth 6], GB [auth w], H, HA [auth 7], HB [auth x], I, IA [auth 8], J, JA [auth 9], K, KA [auth a], L, LA [auth b], M, MA [auth c], N, NA [auth d], O, OA [auth e], P, PA [auth f], Q, QA [auth g], R, RA [auth h], S, SA [auth i], T, TA [auth j], U, UA [auth k], V, VA [auth l], W, WA [auth m], X, XA [auth n], Y, YA [auth o], Z, ZA [auth p]	IPR007544	Type 1 encapsulin shell protein	Family
A, AA [auth 0], AB [auth q], B, BA [auth 1], A, AA [auth 0], AB [auth q], B, BA [auth 1], BB [auth r], C, CA [auth 2], CB [auth s], D, DA [auth 3], DB [auth t], E, EA [auth 4], EB [auth u], F, FA [auth 5], FB [auth v], G, GA [auth 6], GB [auth w], H, HA [auth 7], HB [auth x], I, IA [auth 8], J, JA [auth 9], K, KA [auth a], L, LA [auth b], M, MA [auth c], N, NA [auth d], O, OA [auth e], P, PA [auth f], Q, QA [auth g], R, RA [auth h], S, SA [auth i], T, TA [auth j], U, UA [auth k], V, VA [auth l], W, WA [auth m], X, XA [auth n], Y, YA [auth o], Z, ZA [auth p]	IPR051429	Encapsulin nanocompartment	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.