Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth C]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8068016 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth L]V-set_3e6wdsL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_3ECOD (1.6)
B [auth A]Rhv_5e6wdsA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_5ECOD (1.6)
C [auth B]Rhv_1e6wdsB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_1ECOD (1.6)
D [auth C]Rhv_3e6wdsC1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_3ECOD (1.6)
E [auth D]Pico_P1A_C,Pico_P1A_Ne6wdsD1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Pico_P1A_C,Pico_P1A_NECOD (1.6)
F [auth H]V-set_12e6wdsH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth A]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
C [auth B]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
D [auth C]2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
A [auth L]Fv EV68-159 V-LAMBDA Homo sapiens (human) IGLV1-47*01, IGLJ2*01, IGLJ3*01 V-DOMAIN V-LAMBDA IG FV-HEAVY_LAMBDA IMGT (202443-0)
F [auth H]Fv EV68-159 VH Homo sapiens (human) IGHV3-21*01, IGHV3-21*02, IGHV3-21*04, IGHV3-21*03, IGHV3-21*06, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHJ3*01, IGHJ5*01, IGHJ8*01 V-DOMAIN VH IG FV-HEAVY_LAMBDA IMGT (202443-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
A [auth L]Light ChainIGLV1 Lambdaviral protein 3 | viral protein 1 | viral protein 2SAbDab (2024-11-01)
F [auth H]Heavy ChainIGHV3 -viral protein 3 | viral protein 1 | viral protein 2SAbDab (2024-11-01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth A]PF22663Picornavirus coat protein (Rhv_5)Picornavirus coat proteinThis domain is found in capsid proteins from picornavirus, such as enterovirus, rhinovirus and foot-and-mouth disease virus [1-5].Domain
C [auth B]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
D [auth C]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L]EV68-159 light chain---
B [auth A]viral protein 1
C [auth B]viral protein 2
D [auth C]viral protein 3
E [auth D]viral protein 4
F [auth H]EV68-159 heavy chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth A]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth A]IPR002527Picornavirus 2B proteinDomain
B [auth A]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth A]IPR003593AAA+ ATPase domainDomain
B [auth A]IPR003138Picornavirus coat protein VP4Family
B [auth A]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth A]IPR001676Picornavirus capsidDomain
B [auth A]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth A]IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth A]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth A]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth A]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth A]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth A]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth A]IPR014838Poliovirus 3A protein-likeDomain
B [auth A]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth A]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth A]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth A]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth B]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth B]IPR002527Picornavirus 2B proteinDomain
C [auth B]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth B]IPR003593AAA+ ATPase domainDomain
C [auth B]IPR003138Picornavirus coat protein VP4Family
C [auth B]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth B]IPR001676Picornavirus capsidDomain
C [auth B]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth B]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth B]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth B]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth B]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth B]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth B]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth B]IPR014838Poliovirus 3A protein-likeDomain
C [auth B]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth B]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth B]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth B]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth C]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth C]IPR002527Picornavirus 2B proteinDomain
D [auth C]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth C]IPR003593AAA+ ATPase domainDomain
D [auth C]IPR003138Picornavirus coat protein VP4Family
D [auth C]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth C]IPR001676Picornavirus capsidDomain
D [auth C]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth C]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth C]IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth C]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth C]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth C]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth C]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth C]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth C]IPR014838Poliovirus 3A protein-likeDomain
D [auth C]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth C]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth C]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth C]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
E [auth D]IPR029053Viral coat protein subunitHomologous Superfamily
E [auth D]IPR003138Picornavirus coat protein VP4Family
E [auth D]IPR001676Picornavirus capsidDomain
E [auth D]IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily