6W19 | pdb_00006w19

Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	SBP_bac_1	e6w19Z1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
Y	SBP_bac_1	e6w19Y1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
X	SBP_bac_1	e6w19X1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
W	SBP_bac_1	e6w19W1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
V	SBP_bac_1	e6w19V1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
U	SBP_bac_1	e6w19U1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
T	SBP_bac_1	e6w19T1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
S	SBP_bac_1	e6w19S1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
R	SBP_bac_1	e6w19R1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
Q	SBP_bac_1	e6w19Q1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
FA [auth u]	SBP_bac_1	e6w19u1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
EA [auth e]	SBP_bac_1	e6w19e1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
DA [auth d]	SBP_bac_1	e6w19d1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
CA [auth c]	SBP_bac_1	e6w19c1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
BA [auth b]	SBP_bac_1	e6w19b1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
AA [auth a]	SBP_bac_1	e6w19a1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth 2], SA [auth p], TA [auth q], UA [auth r], VA [auth s], WA [auth t], XA [auth 3]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], LA [auth 1]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], FA [auth u], Q, R, S, T, U, V, W, X, Y, Z	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], FA [auth u], Q, R, S, T, U, V, W, X, Y, Z	PF06112	Gammaherpesvirus capsid protein (Herpes_capsid)	Gammaherpesvirus capsid protein	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF06112	Gammaherpesvirus capsid protein (Herpes_capsid)	Gammaherpesvirus capsid protein	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth 2], SA [auth p], TA [auth q], UA [auth r], VA [auth s], WA [auth t], XA [auth 3]	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], LA [auth 1]	Triplex capsid protein 1	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], FA [auth u], Q, R, S, T, U, V, W, X, Y, Z	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth 2], SA [auth p], TA [auth q], UA [auth r], VA [auth s], WA [auth t], XA [auth 3]	IPR002690	Herpesvirus capsid protein 2	Family
GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], LA [auth 1]	IPR004999	Herpesvirus capsid shell protein 1	Family
AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], FA [auth u], Q, R, S, T, U, V, W, X, Y, Z	IPR009299	Gammaherpesvirus capsid	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR000912	Herpesvirus major capsid protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.