6W19

Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AA [auth a]	Herpes_capsid	e6w19a1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
BA [auth b]	Herpes_capsid	e6w19b1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
CA [auth c]	Herpes_capsid	e6w19c1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
DA [auth d]	Herpes_capsid	e6w19d1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
EA [auth e]	Herpes_capsid	e6w19e1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
FA [auth u]	Herpes_capsid	e6w19u1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
Q	Herpes_capsid	e6w19Q1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
R	Herpes_capsid	e6w19R1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
S	Herpes_capsid	e6w19S1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
T	Herpes_capsid	e6w19T1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
U	Herpes_capsid	e6w19U1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
V	Herpes_capsid	e6w19V1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
W	Herpes_capsid	e6w19W1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
X	Herpes_capsid	e6w19X1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
Y	Herpes_capsid	e6w19Y1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
Z	Herpes_capsid	e6w19Z1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF06112	Gammaherpesvirus capsid protein (Herpes_capsid)	Gammaherpesvirus capsid protein	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], FA [auth u], Q, R, S, T, U, V, W, X, Y, Z	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], FA [auth u], Q, R, S, T, U, V, W, X, Y, Z	PF06112	Gammaherpesvirus capsid protein (Herpes_capsid)	Gammaherpesvirus capsid protein	-	Family
GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], LA [auth 1]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth 2], SA [auth p], TA [auth q], UA [auth r], VA [auth s], WA [auth t], XA [auth 3]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], FA [auth u], Q, R, S, T, U, V, W, X, Y, Z	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], LA [auth 1]	Triplex capsid protein 1	DNA binding binding organic cyclic compound binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth 2], SA [auth p], TA [auth q], UA [auth r], VA [auth s], WA [auth t], XA [auth 3]	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR000912	Herpesvirus major capsid protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], AA [auth a], BA [auth b], CA [auth c], DA [auth d], EA [auth e], FA [auth u], Q, R, S, T, U, V, W, X, Y, Z	IPR009299	Gammaherpesvirus capsid	Family
GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], GA [auth f], HA [auth g], IA [auth h], JA [auth i], KA [auth j], LA [auth 1]	IPR004999	Herpesvirus capsid shell protein 1	Family
MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth 2], SA [auth p], TA [auth q], UA [auth r], VA [auth s], WA [auth t], XA [auth 3]	IPR002690	Herpesvirus capsid protein 2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.