6VWZ
Crystal structure of air-exposed C45G/T50C D. vulgaris carbon monoxide dehydrogenase (20 minute air exposure)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6vwza_ | Multi-domain proteins (alpha and beta) | Prismane protein-like | Prismane protein-like | automated matches | automated matches | (Nitratidesulfovibrio vulgaris str. Hildenborough ) [TaxId: 882 ], | SCOPe (2.08) |
B | d6vwzb_ | Multi-domain proteins (alpha and beta) | Prismane protein-like | Prismane protein-like | automated matches | automated matches | (Nitratidesulfovibrio vulgaris str. Hildenborough ) [TaxId: 882 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03063 | e6vwzA2 | A: alpha bundles | X: Helical bundle domain in prismane-like proteins (From Topology) | H: Helical bundle domain in prismane-like proteins (From Topology) | T: Helical bundle domain in prismane-like proteins | F: PF03063 | ECOD (1.6) |
A | PF03063 | e6vwzA1 | A: a/b three-layered sandwiches | X: Rossmann-like domain in prismane-like proteins (From Topology) | H: Rossmann-like domain in prismane-like proteins (From Topology) | T: Rossmann-like domain in prismane-like proteins | F: PF03063 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6vwzA3 | A: few secondary structure elements | X: Fe-binding domain in prismane-like proteins (From Topology) | H: Fe-binding domain in prismane-like proteins (From Topology) | T: Fe-binding domain in prismane-like proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF03063 | e6vwzB4 | A: alpha bundles | X: Helical bundle domain in prismane-like proteins (From Topology) | H: Helical bundle domain in prismane-like proteins (From Topology) | T: Helical bundle domain in prismane-like proteins | F: PF03063 | ECOD (1.6) |
B | PF03063 | e6vwzB3 | A: a/b three-layered sandwiches | X: Rossmann-like domain in prismane-like proteins (From Topology) | H: Rossmann-like domain in prismane-like proteins (From Topology) | T: Rossmann-like domain in prismane-like proteins | F: PF03063 | ECOD (1.6) |
B | F_UNCLASSIFIED | e6vwzB2 | A: few secondary structure elements | X: Fe-binding domain in prismane-like proteins (From Topology) | H: Fe-binding domain in prismane-like proteins (From Topology) | T: Fe-binding domain in prismane-like proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03063 | Prismane/CO dehydrogenase family (Prismane) | Prismane/CO dehydrogenase family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016099 | Prismane-like, alpha/beta-sandwich | Homologous Superfamily | |
IPR004137 | Hydroxylamine reductase/Ni-containing CO dehydrogenase | Family | |
IPR016101 | CO dehydrogenase, alpha-bundle | Homologous Superfamily | |
IPR010047 | Ni-containing CO dehydrogenase | Family | |
IPR011254 | Prismane-like superfamily | Homologous Superfamily |