6VGU

Crystal structure of FERM-folded talin head domain bound to the NPLY motif of beta3-integrin

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PH domain-like	8044255	3000134	SCOP2B (2021-05-27)
A	SCOP2B Superfamily	FERM central domain-like	8044254	3001227	SCOP2B (2021-05-27)
A	SCOP2B Superfamily	Ubiquitin-like	8091437	3000157	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF02174	e6vguA3	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: PF02174	ECOD (1.6)
A	PF00373	e6vguA2	A: alpha bundles	X: Acyl-CoA binding protein-like (From Topology)	H: Acyl-CoA binding protein-like (From Topology)	T: Acyl-CoA binding protein-like	F: PF00373	ECOD (1.6)
A	PF09379	e6vguA1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF09379	ECOD (1.6)
A	PF16511	e6vguA4	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: PF16511	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02174	PTB domain (IRS-1 type) (IRS)	PTB domain (IRS-1 type)	-	Domain
A	PF00373	FERM central domain (FERM_M)	FERM central domain	This domain is the central structural domain of the FERM domain.	Domain
A	PF16511	N-terminal or F0 domain of Talin-head FERM (FERM_f0)	N-terminal or F0 domain of Talin-head FERM	FERM_f0 forms a stable globular structure. The fold is an ubiquitin-like fold joined to the f1 domain in a novel fixed orientation by an extensive charged interface. It is required for maximal integrin-activation, by interacting with other FA compon ...	FERM_f0 forms a stable globular structure. The fold is an ubiquitin-like fold joined to the f1 domain in a novel fixed orientation by an extensive charged interface. It is required for maximal integrin-activation, by interacting with other FA components, No binding partner has yet been found for it [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Integrin beta-3,Talin-1	protein-containing complex binding fibrinogen binding binding cation binding ion binding metal ion binding small molecule binding protein binding enzyme binding protease binding signaling receptor binding cytokine receptor binding vascular endothelial growth factor receptor binding vascular endothelial growth factor receptor 2 binding protein-containing complex binding fibrinogen binding binding cation binding ion binding metal ion binding small molecule binding protein binding enzyme binding protease binding signaling receptor binding cytokine receptor binding vascular endothelial growth factor receptor binding vascular endothelial growth factor receptor 2 binding growth factor receptor binding isomerase activity intramolecular oxidoreductase activity catalytic activity, acting on a protein intramolecular oxidoreductase activity, transposing S-S bonds catalytic activity protein disulfide isomerase activity neuregulin binding growth factor binding fibroblast growth factor binding fibronectin binding identical protein binding extracellular matrix binding insulin-like growth factor binding insulin-like growth factor I binding C-X3-C chemokine binding chemokine binding cytokine binding cell adhesion molecule binding integrin binding kinase binding protein kinase C binding protein kinase binding phospholipid binding lipid binding phosphatidylinositol binding cytoskeletal protein binding actin binding actin filament binding LIM domain binding protein domain specific binding vinculin binding structural constituent of cytoskeleton structural molecule activity modified amino acid binding phosphatidylserine binding	cellular response to stimulus cellular response to nitrogen compound response to stimulus response to endogenous stimulus response to organonitrogen compound response to peptide hormone cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus cellular response to organonitrogen compound response to hormone response to chemical cellular response to stimulus cellular response to nitrogen compound response to stimulus response to endogenous stimulus response to organonitrogen compound response to peptide hormone cellular response to peptide hormone stimulus response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus cellular response to organonitrogen compound response to hormone response to chemical cellular process cellular response to insulin-like growth factor stimulus cellular response to hormone stimulus regulation of biological process regulation of cellular process regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process cell-substrate adhesion positive regulation of cell-matrix adhesion cell adhesion cell-matrix adhesion positive regulation of cell-substrate adhesion regulation of cell-matrix adhesion positive regulation of cellular process biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction regulation of localization negative regulation of lipid transport transport regulation of transport negative regulation of biological process lipid localization lipid transport negative regulation of transport regulation of lipid transport establishment of localization negative regulation of lipid localization localization regulation of lipid localization macromolecule localization substrate adhesion-dependent cell spreading positive regulation of substrate adhesion-dependent cell spreading regulation of substrate adhesion-dependent cell spreading positive regulation of locomotion regulation of cell motility positive regulation of smooth muscle cell migration regulation of smooth muscle cell migration positive regulation of cell migration smooth muscle cell migration muscle cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion cell surface receptor signaling pathway signaling platelet-derived growth factor receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway cell communication signal transduction enzyme-linked receptor protein signaling pathway cell population proliferation positive regulation of cell population proliferation positive regulation of osteoblast proliferation osteoblast proliferation regulation of cell population proliferation regulation of osteoblast proliferation regulation of signaling regulation of signal transduction regulation of response to stimulus regulation of cell communication G protein-coupled receptor signaling pathway regulation of G protein-coupled receptor signaling pathway chemotaxis negative chemotaxis taxis response to external stimulus regulation of smooth muscle cell proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation muscle cell proliferation cellular localization regulation of postsynaptic neurotransmitter receptor diffusion trapping localization within membrane protein-containing complex localization neurotransmitter receptor diffusion trapping regulation of postsynaptic membrane neurotransmitter receptor levels regulation of cellular localization receptor diffusion trapping regulation of biological quality receptor localization to synapse postsynaptic neurotransmitter receptor diffusion trapping regulation of receptor localization to synapse cellular response to xenobiotic stimulus response to xenobiotic stimulus lipoprotein metabolic process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of cellular process regulation of lipoprotein metabolic process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of lipoprotein metabolic process organonitrogen compound metabolic process regulation of protein metabolic process cellular metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process metabolic process macromolecule metabolic process regulation of metabolic process developmental process cellular component organization anatomical structure morphogenesis cell projection morphogenesis cell projection organization anatomical structure development cellular component organization or biogenesis cell morphogenesis import into cell phagocytosis apoptotic cell clearance endocytosis vesicle-mediated transport positive regulation of cell communication positive regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade positive regulation of signaling monoamine transport nitrogen compound transport regulation of neurotransmitter transport serotonin uptake regulation of serotonin uptake serotonin transport organic hydroxy compound transport neurotransmitter transport establishment of localization in cell neurotransmitter uptake neurotransmitter reuptake regulation of neurotransmitter uptake trophoblast cell migration multicellular organismal process multi-multicellular organism process regulation of trophoblast cell migration reproductive process multicellular organism development ameboidal-type cell migration female pregnancy embryo implantation multi-organism reproductive process regulation of cytoskeleton organization regulation of cellular component organization regulation of actin filament-based process actin cytoskeleton organization regulation of organelle organization organelle organization regulation of actin cytoskeleton organization actin filament-based process cytoskeleton organization response to activity regulation of body fluid levels cellular biosynthetic process protein maturation response to stress blood coagulation, fibrin clot formation coagulation response to wounding wound healing protein activation cascade hemostasis gene expression macromolecule biosynthetic process blood coagulation biosynthetic process cell adhesion mediated by integrin extracellular matrix organization regulation of extracellular matrix organization extracellular structure organization external encapsulating structure organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly cell-substrate junction assembly cell-substrate junction organization regulation of leukocyte migration positive regulation of leukocyte migration leukocyte migration immune system process regulation of immune system process positive regulation of immune system process response to mechanical stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus protein localization regulation of protein localization cellular macromolecule localization formation of primary germ layer mesodermal cell differentiation cellular developmental process mesoderm morphogenesis embryonic morphogenesis tissue development embryo development gastrulation tissue morphogenesis cell differentiation anatomical structure formation involved in morphogenesis mesoderm formation mesoderm development negative regulation of endothelial cell apoptotic process regulation of epithelial cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death epithelial cell apoptotic process negative regulation of apoptotic process negative regulation of epithelial cell apoptotic process endothelial cell apoptotic process apoptotic process programmed cell death regulation of endothelial cell apoptotic process endothelial cell proliferation positive regulation of epithelial cell proliferation regulation of endothelial cell proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation maintenance of synapse structure postsynapse organization cellular component maintenance cell junction maintenance maintenance of postsynaptic specialization structure postsynaptic density organization synapse organization postsynaptic specialization organization regulation of protein modification process positive regulation of phosphorylation regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of cellular metabolic process peptidyl-tyrosine modification positive regulation of phosphate metabolic process positive regulation of metabolic process positive regulation of peptidyl-tyrosine phosphorylation positive regulation of protein modification process regulation of phosphate metabolic process peptidyl-amino acid modification phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process protein modification process phosphorus metabolic process positive regulation of protein phosphorylation protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation regulation of peptidyl-tyrosine phosphorylation macromolecule modification regulation of phosphorylation regulation of phosphorus metabolic process peptidyl-tyrosine phosphorylation positive regulation of macromolecule biosynthetic process positive regulation of biosynthetic process regulation of biosynthetic process regulation of cellular biosynthetic process regulation of gene expression positive regulation of gene expression regulation of macromolecule biosynthetic process positive regulation of cellular biosynthetic process homotypic cell-cell adhesion cell activation platelet aggregation cell-cell adhesion platelet activation lipid storage maintenance of location regulation of lipid storage negative regulation of lipid storage regulation of lymphocyte migration positive regulation of mononuclear cell migration regulation of mononuclear cell migration positive regulation of lymphocyte migration positive regulation of T cell migration lymphocyte migration regulation of T cell migration mononuclear cell migration T cell migration homeostatic process regulation of bone remodeling tissue homeostasis regulation of tissue remodeling regulation of bone resorption bone resorption multicellular organismal-level homeostasis tissue remodeling bone remodeling anatomical structure homeostasis positive regulation of multicellular organismal process regulation of multicellular organismal process positive regulation of bone resorption heterotypic cell-cell adhesion regulation of calcium ion transport intracellular calcium ion homeostasis calcium ion transport monoatomic cation homeostasis monoatomic cation transport intracellular monoatomic ion homeostasis regulation of release of sequestered calcium ion into cytosol regulation of monoatomic ion transport inorganic ion transmembrane transport inorganic cation transmembrane transport transmembrane transport release of sequestered calcium ion into cytosol regulation of transmembrane transport chemical homeostasis inorganic ion homeostasis monoatomic ion transmembrane transport calcium ion homeostasis regulation of monoatomic ion transmembrane transport negative regulation of sequestering of calcium ion metal ion transport maintenance of location in cell regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport intracellular monoatomic cation homeostasis monoatomic ion homeostasis monoatomic ion transport intracellular chemical homeostasis regulation of metal ion transport regulation of sequestering of calcium ion calcium ion transmembrane import into cytosol sequestering of calcium ion cellular homeostasis regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport receptor internalization postsynaptic neurotransmitter receptor internalization regulation of receptor internalization vesicle-mediated transport in synapse regulation of postsynaptic neurotransmitter receptor internalization regulation of endocytosis regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport neurotransmitter receptor internalization postsynaptic endocytosis receptor-mediated endocytosis regulation of developmental process negative regulation of developmental process macrophage derived foam cell differentiation regulation of cell differentiation negative regulation of macrophage derived foam cell differentiation foam cell differentiation regulation of macrophage derived foam cell differentiation negative regulation of cell differentiation endothelial cell migration positive regulation of epithelial cell migration tissue migration regulation of endothelial cell migration epithelial cell migration regulation of epithelial cell migration epithelium migration positive regulation of endothelial cell migration cellular response to growth factor stimulus cellular response to platelet-derived growth factor stimulus response to growth factor response to platelet-derived growth factor apolipoprotein A-I-mediated signaling pathway connective tissue development renal system development kidney vasculature development renal system vasculature development positive regulation of glomerular mesangial cell proliferation regulation of glomerular mesangial cell proliferation nephron development system development blood vessel development positive regulation of cell proliferation involved in kidney development animal organ development cell proliferation involved in kidney development glomerular mesangium development regulation of cell proliferation involved in kidney development vasculature development circulatory system development glomerulus development glomerular mesangial cell proliferation glomerulus vasculature development kidney development fibroblast proliferation regulation of fibroblast proliferation positive regulation of fibroblast proliferation regulation of fibroblast migration positive regulation of fibroblast migration fibroblast migration integrin-mediated signaling pathway positive regulation of cell adhesion mediated by integrin regulation of cell adhesion mediated by integrin angiogenesis regulation of vasculature development positive regulation of developmental process tube morphogenesis regulation of anatomical structure morphogenesis regulation of multicellular organismal development blood vessel morphogenesis tube development positive regulation of angiogenesis positive regulation of vasculature development regulation of angiogenesis regulation of opioid receptor signaling pathway positive regulation of opioid receptor signaling pathway G protein-coupled opioid receptor signaling pathway positive regulation of adenylate cyclase-inhibiting opioid receptor signaling pathway positive regulation of G protein-coupled receptor signaling pathway adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway regulation of adenylate cyclase-inhibiting opioid receptor signaling pathway adenylate cyclase-inhibiting opioid receptor signaling pathway adenylate cyclase-modulating G protein-coupled receptor signaling pathway myeloid leukocyte differentiation regulation of leukocyte differentiation cell development positive regulation of osteoclast differentiation regulation of cell development regulation of osteoclast differentiation positive regulation of cell differentiation positive regulation of hemopoiesis osteoclast differentiation hemopoiesis regulation of myeloid cell differentiation positive regulation of cell development regulation of myeloid leukocyte differentiation positive regulation of myeloid leukocyte differentiation myeloid cell differentiation positive regulation of myeloid cell differentiation regulation of hemopoiesis positive regulation of leukocyte differentiation leukocyte differentiation protein-containing complex organization protein-containing complex assembly integrin activation cortical actin cytoskeleton organization cortical cytoskeleton organization	cell-cell junction anchoring junction cell junction cellular anatomical entity cell periphery protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex alphav-beta3 integrin-HMGB1 complex receptor complex integrin alpha9-beta1 complex integrin complex cell-cell junction anchoring junction cell junction cellular anatomical entity cell periphery protein-containing complex plasma membrane protein complex membrane plasma membrane membrane protein complex alphav-beta3 integrin-HMGB1 complex receptor complex integrin alpha9-beta1 complex integrin complex plasma membrane signaling receptor complex protein complex involved in cell adhesion focal adhesion cell-substrate junction synapse plasma membrane region synaptic membrane apical part of cell apical plasma membrane ruffle cell leading edge leading edge membrane plasma membrane bounded cell projection cell projection ruffle membrane cell projection membrane cell surface lamellipodium membrane lamellipodium postsynapse postsynaptic membrane alphav-beta3 integrin-PKCalpha complex external side of plasma membrane side of membrane actin-based cell projection microvillus microvillus membrane glutamatergic synapse alphav-beta3 integrin-IGF-1-IGF1R complex integrin alphav-beta3 complex membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cytoplasmic vesicle organelle cytoplasm vesicle glycinergic synapse nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen alpha9-beta1 integrin-ADAM8 complex filopodium membrane filopodium adherens junction cytoskeleton intracellular non-membrane-bounded organelle non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR033760	Integrin beta N-terminal	Domain
A	IPR013111	EGF-like domain, extracellular	Domain
A	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
A	IPR032695	Integrin domain superfamily	Homologous Superfamily
A	IPR002369	Integrin beta subunit, VWA domain	Domain
A	IPR040622	Integrin beta, epidermal growth factor-like domain 1	Domain
A	IPR036349	Integrin beta tail domain superfamily	Homologous Superfamily
A	IPR014836	Integrin beta subunit, cytoplasmic domain	Domain
A	IPR012896	Integrin beta subunit, tail	Domain
A	IPR015812	Integrin beta subunit	Family
A	IPR016201	PSI domain	Domain
A	IPR000299	FERM domain	Domain
A	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A	IPR019748	FERM central domain	Domain
A	IPR015009	Vinculin-binding site-containing domain	Domain
A	IPR032425	Talin, N-terminal F0 domain	Domain
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR035964	I/LWEQ domain superfamily	Homologous Superfamily
A	IPR015224	Talin, central	Domain
A	IPR019749	Band 4.1 domain	Domain
A	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A	IPR036476	Talin, central domain superfamily	Homologous Superfamily
A	IPR036723	Alpha-catenin/vinculin-like superfamily	Homologous Superfamily
A	IPR002558	I/LWEQ domain	Domain
A	IPR019747	FERM conserved site	Conserved Site
A	IPR049108	Talin, R4 domain	Domain
A	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
A	IPR037438	Talin-1/2, rod-segment	Domain