Annotations: 6VFE

Gasdermin D pore

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Hydantoinase_B	e6vfeA1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Hydantoinase_B	ECOD (v294.2)
AA [auth a]	Raptor_N	e6vfea1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
B	Raptor_N	e6vfeB1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
BA [auth b]	Raptor_N	e6vfeb1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
C	Raptor_N	e6vfeC1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
CA [auth c]	Raptor_N	e6vfec1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
D	Raptor_N	e6vfeD1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
DA [auth d]	Raptor_N	e6vfed1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
E	Raptor_N	e6vfeE1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
EA [auth e]	Raptor_N	e6vfee1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
F	Raptor_N	e6vfeF1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
FA [auth f]	Raptor_N	e6vfef1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
G	Raptor_N	e6vfeG1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
GA [auth g]	Raptor_N	e6vfeg1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
H	Raptor_N	e6vfeH1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
I	Raptor_N	e6vfeI1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
J	Raptor_N	e6vfeJ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
K	Raptor_N	e6vfeK1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
L	Raptor_N	e6vfeL1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
M	Raptor_N	e6vfeM1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
N	Raptor_N	e6vfeN1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
O	Raptor_N	e6vfeO1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
P	Raptor_N	e6vfeP1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
Q	Raptor_N	e6vfeQ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
R	Raptor_N	e6vfeR1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
S	Raptor_N	e6vfeS1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
T	Raptor_N	e6vfeT1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
U	Raptor_N	e6vfeU1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
V	Raptor_N	e6vfeV1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
W	Raptor_N	e6vfeW1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
X	Raptor_N	e6vfeX1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
Y	Raptor_N	e6vfeY1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
Z	Raptor_N	e6vfeZ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PF04598	Gasdermin pore forming domain (Gasdermin)	Gasdermin pore forming domain	The precise function of this protein is unknown. A deletion/insertion mutation is associated with an autosomal dominant non-syndromic hearing impairment form [1]. In addition, this protein has also been found to contribute to acquired etoposide resis ...	The precise function of this protein is unknown. A deletion/insertion mutation is associated with an autosomal dominant non-syndromic hearing impairment form [1]. In addition, this protein has also been found to contribute to acquired etoposide resistance in melanoma cells [2]. This family also includes the gasdermin protein [3]	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	Gasdermin-D, N-terminal	wide pore channel activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity ion binding binding anion binding phosphatidic acid binding phospholipid binding lipid binding small molecule binding phosphatidylglycerol binding cardiolipin binding wide pore channel activity passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity ion binding binding anion binding phosphatidic acid binding phospholipid binding lipid binding small molecule binding phosphatidylglycerol binding cardiolipin binding phosphatidylinositol-4,5-bisphosphate binding phosphatidylinositol bisphosphate binding phosphatidylinositol phosphate binding phosphatidylinositol-4-phosphate binding modified amino acid binding phosphatidylserine binding	regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation positive regulation of biological process response to external stimulus regulation of inflammatory response positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stimulus regulation of response to stress response to stress regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation positive regulation of biological process response to external stimulus regulation of inflammatory response positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stimulus regulation of response to stress response to stress positive regulation of defense response inflammatory response ceramide metabolic process sphingolipid biosynthetic process biosynthetic process ceramide biosynthetic process lipid biosynthetic process sphingolipid metabolic process primary metabolic process metabolic process cellular process lipid metabolic process biological process involved in interspecies interaction between organisms immune response response to other organism defense response to symbiont response to biotic stimulus immune system process defense response to other organism innate immune response response to external biotic stimulus cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis pore complex assembly defense response to bacterium response to bacterium multicellular organismal process regulation of cellular process interleukin-1 production regulation of interleukin-1 beta production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of interleukin-1 beta production positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of interleukin-1 production positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of interleukin-1 production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression interleukin-1 beta production positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process pyroptotic cell death pyroptotic inflammatory response cell death programmed cell death establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization defense response to Gram-negative bacterium protein metabolic process protein maturation protein complex oligomerization protein homooligomerization membrane organization wound healing plasma membrane repair plasma membrane organization response to wounding endomembrane system organization defense response to Gram-positive bacterium	cellular anatomical structure membrane membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle mitochondrial envelope cytoplasm organelle membrane cytosol cellular anatomical structure membrane membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle mitochondrial envelope cytoplasm organelle membrane cytosol cell periphery plasma membrane membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule endomembrane system intracellular organelle lumen organelle lumen cytoplasmic vesicle ficolin-1-rich granule lumen secretory granule secretory vesicle vesicle nucleus nucleoplasm nuclear lumen tertiary granule lumen tertiary granule extracellular region canonical inflammasome complex protein-containing complex NLRP3 inflammasome complex vesicle lumen cytoplasmic vesicle lumen secretory granule lumen specific granule lumen specific granule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR040460	Gasdermin, pore forming domain	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR007677	Gasdermin	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR041263	Gasdermin, PUB domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	: P57764	Alcoholism ovarian cancer tuberculosis cutaneous lupus erythematosus pituitary cancer osteosarcoma psoriasis

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, AA [auth a], B, BA [auth b], C A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	OPM	Transmembrane	Beta-barrel transmembrane	Gasdermin	Gasdermin

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, AA [auth a], B, BA [auth b], C A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, AA [auth a], B, BA [auth b], C A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Gasdermin (GSDM) Family	Gasdermin D pore