6VCG | pdb_00006vcg

Crystal structure of Nitrosotalea devanaterra carotenoid cleavage dioxygenase, cobalt form

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	RPE65-like	8096330	3002594	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RPE65-like	8096330	3002594	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RPE65-like	8096330	3002594	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RPE65-like	8096330	3002594	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RPE65-like	8096330	3002594	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RPE65-like	8096330	3002594	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	SBP_bac_1	e6vcgF1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
E	SBP_bac_1	e6vcgE1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
D	SBP_bac_1	e6vcgD1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
C	SBP_bac_1	e6vcgC1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
B	SBP_bac_1	e6vcgB1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)
A	SBP_bac_1	e6vcgA1	A: beta barrels	X: Tail specific protease helical domain	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: SBP_bac_1	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	carotenoid cleavage dioxygenase	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen oxidoreductase activity carotenoid dioxygenase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen catalytic activity dioxygenase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid catabolic process lipid catabolic process catabolic process carotene catabolic process hydrocarbon catabolic process terpene metabolic process primary metabolic process hydrocarbon metabolic process carotene metabolic process metabolic process cellular process terpene catabolic process isoprenoid metabolic process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR004294	Carotenoid oxygenase	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.