Annotations: 6VAA

Structure of the Fanconi Anemia ID complex bound to ICL DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	7tm_2	e6vaaB1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: 7tm_2	ECOD (v294.2)
A	7tm_2	e6vaaA1	A: beta barrels	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: 7tm_2	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF14674	FANCI solenoid 1 cap (FANCI_S1-cap)	FANCI solenoid 1 cap	-	Repeat
A	PF14675	FANCI solenoid 1 (FANCI_S1)	FANCI solenoid 1	-	Repeat
A	PF14676	FANCI solenoid 2 (FANCI_S2)	FANCI solenoid 2	-	Repeat
A	PF14677	FANCI solenoid 3 (FANCI_S3)	FANCI solenoid 3	-	Repeat
A	PF14678	FANCI solenoid 4 (FANCI_S4)	FANCI solenoid 4	-	Repeat
A	PF14679	FANCI helical domain 1 (FANCI_HD1)	FANCI helical domain 1	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth W]	DNA (26-MER)	-	-	-
D [auth X]	DNA (5'-D(PTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPT)-3')	-	-	-
F [auth Z]	DNA (5'-D(TPTPTPTPTPTPTPTPTPTPTPTPTPTPTPT)-3')	-	-	-
E [auth Y]	DNA (5'-D(PAPAPAPAPAPAPAPAPAPAPAPAPAPAP*A)-3')	-	-	-
B	Fanconi anemia group D2 protein	protein binding binding DNA polymerase binding enzyme binding	sexual reproduction reproductive process multicellular organismal reproductive process gamete generation regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation regulation of inflammatory response response to external stimulus regulation of response to stimulus response to stress sexual reproduction reproductive process multicellular organismal reproductive process gamete generation regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation regulation of inflammatory response response to external stimulus regulation of response to stimulus response to stress regulation of response to stress inflammatory response multicellular organismal process regulation of leukocyte differentiation regulation of cellular process cellular developmental process regulation of developmental process regulation of leukocyte activation cell development regulation of cell activation mononuclear cell differentiation regulation of cell differentiation lymphocyte activation lymphocyte differentiation regulation of cell development leukocyte activation regulation of T cell differentiation multicellular organism development T cell activation cell differentiation anatomical structure development T cell differentiation regulation of immune system process regulation of multicellular organismal process developmental process regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis regulation of regulatory T cell differentiation cell activation regulation of T cell activation immune system process regulatory T cell differentiation regulation of hemopoiesis cellular process leukocyte differentiation regulation of lymphocyte activation cellular response to stimulus regulation of signaling cell surface receptor signaling pathway signaling regulation of signal transduction cell communication regulation of CD40 signaling pathway regulation of cell communication CD40 signaling pathway signal transduction head development brain morphogenesis animal organ development brain development nervous system development anatomical structure morphogenesis central nervous system development animal organ morphogenesis system development response to ionizing radiation response to radiation response to abiotic stimulus response to gamma radiation primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response metabolic process interstrand cross-link repair macromolecule metabolic process DNA repair DNA damage checkpoint signaling regulation of cell cycle phase transition negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle regulation of mitotic cell cycle mitotic DNA integrity checkpoint signaling mitotic DNA damage checkpoint signaling negative regulation of cellular process negative regulation of cell cycle phase transition cell cycle mitotic intra-S DNA damage checkpoint signaling regulation of cell cycle cell cycle process regulation of cell cycle process DNA integrity checkpoint signaling negative regulation of cell cycle process cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling mitotic cell cycle process signal transduction in response to DNA damage meiotic chromosome segregation meiotic cell cycle organelle fission chromosome organization meiotic cell cycle process cellular component organization chromosome organization involved in meiotic cell cycle nuclear division organelle organization meiosis I meiosis I cell cycle process homologous chromosome pairing at meiosis nuclear chromosome segregation meiotic nuclear division homologous chromosome segregation cellular component organization or biogenesis chromosome segregation homologous recombination reciprocal homologous recombination double-strand break repair DNA recombination reciprocal meiotic recombination double-strand break repair involved in meiotic recombination response to oxidative stress cellular response to chemical stimulus response to chemical cellular response to oxidative stress cellular response to chemical stress neuronal stem cell population maintenance maintenance of cell number stem cell population maintenance	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen chromosome condensed chromosome protein-containing complex catalytic complex DNA repair complex cytoplasm cytosol nuclear body nucleoplasm chromatin
A	Fanconi anemia, complementation group I	DNA binding binding nucleic acid binding protein binding DNA polymerase binding enzyme binding	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process interstrand cross-link repair macromolecule metabolic process DNA repair cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process interstrand cross-link repair macromolecule metabolic process DNA repair regulation of cellular process regulation of protein modification process positive regulation of protein metabolic process positive regulation of biological process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process protein ubiquitination positive regulation of macromolecule metabolic process protein metabolic process regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of biological process regulation of post-translational protein modification regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process macromolecule modification post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal	cellular anatomical structure membrane protein-containing complex catalytic complex DNA repair complex intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure membrane protein-containing complex catalytic complex DNA repair complex intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR029448	Fanconi anaemia protein FANCD2	Family
A	IPR029313	FANCI solenoid 3 domain	Domain
A	IPR029310	FANCI helical domain 1	Domain
A	IPR029315	FANCI solenoid 2 domain	Domain
A	IPR029314	FANCI solenoid 4 domain	Domain
A	IPR029312	FANCI helical domain 2	Domain
A	IPR026171	Fanconi anemia group I protein	Family
A	IPR029305	FANCI solenoid 1 cap	Domain
A	IPR029308	FANCI solenoid 1 domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	: Q9BXW9	Fanconi anemia Fanconi anemia complementation group D2 intellectual disability leukemia neurofibromatosis type 1 ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia acute myeloid leukemia psoriasis aplastic anemia congenital anemia endometriosis glioblastoma hepatocellular carcinoma invasive ductal breast carcinoma Fanconi anemia Fanconi anemia complementation group D2 intellectual disability leukemia neurofibromatosis type 1 ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia acute myeloid leukemia psoriasis aplastic anemia congenital anemia endometriosis glioblastoma hepatocellular carcinoma invasive ductal breast carcinoma malignant glioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma Primary microcephaly adrenal cortex carcinoma atopic eczema Fanconi anemia complementation group A head and neck cancer inherited aplastic anemia large cell medulloblastoma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor anemia atypical teratoid rhabdoid tumor ductal breast carcinoma in situ esophageal atresia/tracheoesophageal fistula hematopoietic and lymphoid system neoplasm
A	: Q9NVI1	Fanconi anemia Fanconi anemia complementation group I IgA glomerulonephritis invasive ductal breast carcinoma lung cancer malignant glioma adrenal cortex carcinoma medulloblastoma non-small cell lung carcinoma atopic eczema pancreatic intraductal papillary-mucinous neoplasm breast cancer pilocytic astrocytoma Cytopenia primitive neuroectodermal tumor Fanconi anemia Fanconi anemia complementation group I IgA glomerulonephritis invasive ductal breast carcinoma lung cancer malignant glioma adrenal cortex carcinoma medulloblastoma non-small cell lung carcinoma atopic eczema pancreatic intraductal papillary-mucinous neoplasm breast cancer pilocytic astrocytoma Cytopenia primitive neuroectodermal tumor Sjogren syndrome hematopoietic and lymphoid system neoplasm inherited aplastic anemia large cell medulloblastoma malignant colon neoplasm malignant mesothelioma anemia nasopharyngeal carcinoma ovarian cancer attention deficit hyperactivity disorder, inattentive type peripheral nervous system disease breast carcinoma pituitary cancer ductal breast carcinoma in situ psoriasis esophageal atresia/tracheoesophageal fistula ulcerative colitis glioblastoma hepatocellular carcinoma intellectual disability lung adenocarcinoma malignant ependymoma malignant pancreatic neoplasm neurofibromatosis type 1 aplastic anemia pancreatic intraductal papillary-mucinous carcinoma atypical teratoid rhabdoid tumor peripheral neuropathy congenital anemia endometriosis head and neck cancer

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.