6UZC | pdb_00006uzc

Portal vertex structure of bacteriophage T4

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
PA [auth P]	ATP-synt_C	e6uzcP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
OA [auth O]	ATP-synt_C	e6uzcO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
NA [auth N]	ATP-synt_C	e6uzcN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
MA [auth M]	ATP-synt_C	e6uzcM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
LA [auth L]	ATP-synt_C	e6uzcL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
KA [auth K]	ATP-synt_C	e6uzcK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
JA [auth J]	ATP-synt_C	e6uzcJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
IA [auth I]	ATP-synt_C	e6uzcI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
HA [auth H]	ATP-synt_C	e6uzcH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
GA [auth G]	ATP-synt_C	e6uzcG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
FA [auth F]	ATP-synt_C	e6uzcF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: ATP-synt_C	ECOD (v295)
EA [auth E]	Pentaxin	e6uzcE01	A: alpha arrays	X: Histone-like	H: all-alpha NTP pyrophosphatases	T: Hypothetical protein AF_0060	F: Pentaxin	ECOD (v295)
Z [auth z]	Pyr_redox_3	e6uzcz1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Pyr_redox_3	ECOD (v295)
Y [auth y]		e6uzcy1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
X [auth x]		e6uzcx1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
W [auth w]		e6uzcw1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
V [auth v]		e6uzcv1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
U [auth u]		e6uzcu1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
T [auth t]		e6uzct1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
S [auth s]		e6uzcs1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
R [auth r]		e6uzcr1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
Q [auth q]		e6uzcq1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
P [auth p]		e6uzcp1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
O [auth o]		e6uzco1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
N [auth n]		e6uzcn1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
M [auth m]		e6uzcm1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
L [auth l]		e6uzcl1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
K [auth k]		e6uzck1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
J [auth j]		e6uzcj1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
I [auth i]		e6uzci1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
H [auth h]		e6uzch1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
G [auth g]		e6uzcg1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
F [auth f]		e6uzcf1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
E [auth e]		e6uzce1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
DA [auth D]		e6uzcD1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
D [auth d]		e6uzcd1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
CA [auth C]		e6uzcC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
C [auth c]		e6uzcc1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
BA [auth B]		e6uzcB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
B [auth b]		e6uzcb1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
AA [auth A]		e6uzcA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)
A [auth a]		e6uzca1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
EA [auth E], FA [auth F], GA [auth G], HA [auth H], IA [auth I], EA [auth E], FA [auth F], GA [auth G], HA [auth H], IA [auth I], JA [auth J], KA [auth K], LA [auth L], MA [auth M], NA [auth N], OA [auth O], PA [auth P]	PF07230	Bacteriophage T4-like portal protein (Gp20) (Portal_T4)	Bacteriophage T4-like portal protein (Gp20)	-	Family
EA [auth E], FA [auth F], GA [auth G], HA [auth H], IA [auth I], EA [auth E], FA [auth F], GA [auth G], HA [auth H], IA [auth I], JA [auth J], KA [auth K], LA [auth L], MA [auth M], NA [auth N], OA [auth O], PA [auth P]	PF07068	Major capsid protein Gp23 (Gp23)	Major capsid protein Gp23	-	Family
A [auth a], AA [auth A], B [auth b], BA [auth B], C [auth c], A [auth a], AA [auth A], B [auth b], BA [auth B], C [auth c], CA [auth C], D [auth d], DA [auth D], E [auth e], F [auth f], G [auth g], H [auth h], I [auth i], J [auth j], K [auth k], L [auth l], M [auth m], N [auth n], O [auth o], P [auth p], Q [auth q], R [auth r], S [auth s], T [auth t], U [auth u], V [auth v], W [auth w], X [auth x], Y [auth y], Z [auth z]	PF07068	Major capsid protein Gp23 (Gp23)	Major capsid protein Gp23	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
EA [auth E], FA [auth F], GA [auth G], HA [auth H], IA [auth I], EA [auth E], FA [auth F], GA [auth G], HA [auth H], IA [auth I], JA [auth J], KA [auth K], LA [auth L], MA [auth M], NA [auth N], OA [auth O], PA [auth P]	Portal protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle symbiont genome ejection through host cell envelope, contractile tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction exit from host cell viral release from host cell virion assembly viral genome packaging	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part protein-containing complex viral capsid virion component viral portal complex
A [auth a], AA [auth A], B [auth b], BA [auth B], C [auth c], A [auth a], AA [auth A], B [auth b], BA [auth B], C [auth c], CA [auth C], D [auth d], DA [auth D], E [auth e], F [auth f], G [auth g], H [auth h], I [auth i], J [auth j], K [auth k], L [auth l], M [auth m], N [auth n], O [auth o], P [auth p], Q [auth q], R [auth r], S [auth s], T [auth t], U [auth u], V [auth v], W [auth w], X [auth x], Y [auth y], Z [auth z]	Major capsid protein	-	-	viral capsid virion component icosahedral viral capsid T=13 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
EA [auth E], FA [auth F], GA [auth G], HA [auth H], IA [auth I], EA [auth E], FA [auth F], GA [auth G], HA [auth H], IA [auth I], JA [auth J], KA [auth K], LA [auth L], MA [auth M], NA [auth N], OA [auth O], PA [auth P]	IPR010823	Portal protein Gp20	Family
A [auth a], AA [auth A], B [auth b], BA [auth B], C [auth c], A [auth a], AA [auth A], B [auth b], BA [auth B], C [auth c], CA [auth C], D [auth d], DA [auth D], E [auth e], F [auth f], G [auth g], H [auth h], I [auth i], J [auth j], K [auth k], L [auth l], M [auth m], N [auth n], O [auth o], P [auth p], Q [auth q], R [auth r], S [auth s], T [auth t], U [auth u], V [auth v], W [auth w], X [auth x], Y [auth y], Z [auth z]	IPR010762	Capsid protein, T4-like bacteriophage-like	Family
A [auth a], AA [auth A], B [auth b], BA [auth B], C [auth c], A [auth a], AA [auth A], B [auth b], BA [auth B], C [auth c], CA [auth C], D [auth d], DA [auth D], E [auth e], F [auth f], G [auth g], H [auth h], I [auth i], J [auth j], K [auth k], L [auth l], M [auth m], N [auth n], O [auth o], P [auth p], Q [auth q], R [auth r], S [auth s], T [auth t], U [auth u], V [auth v], W [auth w], X [auth x], Y [auth y], Z [auth z]	IPR038997	Major capsid protein, Myoviridae	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.