6UWI | pdb_00006uwi

Crystal structure of the Clostridium difficile translocase CDTb

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth l]	MIF	e6uwil1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
Y [auth k]	MIF	e6uwik1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
X [auth j]	MIF	e6uwij1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
W [auth i]	MIF	e6uwii1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
V [auth h]	MIF	e6uwih1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
U [auth b]	MIF	e6uwib1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
T [auth c]	MIF	e6uwic1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
S [auth d]	MIF	e6uwid1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
R [auth e]	MIF	e6uwie1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
Q [auth f]	MIF	e6uwif1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
P [auth g]	MIF	e6uwig1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
O [auth a]	MIF	e6uwia1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
N	MIF	e6uwiN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
M	MIF	e6uwiM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
L	MIF	e6uwiL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
K	MIF	e6uwiK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
J	MIF	e6uwiJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
I	MIF	e6uwiI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
H	MIF	e6uwiH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
G [auth B]	MIF	e6uwiB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
F [auth C]	MIF	e6uwiC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
E [auth D]	MIF	e6uwiD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
D [auth E]	MIF	e6uwiE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
C [auth F]	MIF	e6uwiF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
BA [auth n]	MIF	e6uwin1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
B [auth G]	MIF	e6uwiG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
AA [auth m]	MIF	e6uwim1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
A	Pentaxin	e6uwiA01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Pentaxin	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth m], B [auth G], BA [auth n], C [auth F], A, AA [auth m], B [auth G], BA [auth n], C [auth F], D [auth E], E [auth D], F [auth C], G [auth B], H, I, J, K, L, M, N, O [auth a], P [auth g], Q [auth f], R [auth e], S [auth d], T [auth c], U [auth b], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	ADP-ribosyltransferase binding component	-	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth m], B [auth G], BA [auth n], C [auth F], A, AA [auth m], B [auth G], BA [auth n], C [auth F], D [auth E], E [auth D], F [auth C], G [auth B], H, I, J, K, L, M, N, O [auth a], P [auth g], Q [auth f], R [auth e], S [auth d], T [auth c], U [auth b], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR035331	Clostridial binary toxin B/anthrax toxin PA, domain 3	Domain
A, AA [auth m], B [auth G], BA [auth n], C [auth F], A, AA [auth m], B [auth G], BA [auth n], C [auth F], D [auth E], E [auth D], F [auth C], G [auth B], H, I, J, K, L, M, N, O [auth a], P [auth g], Q [auth f], R [auth e], S [auth d], T [auth c], U [auth b], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR011658	PA14 domain	Domain
A, AA [auth m], B [auth G], BA [auth n], C [auth F], A, AA [auth m], B [auth G], BA [auth n], C [auth F], D [auth E], E [auth D], F [auth C], G [auth B], H, I, J, K, L, M, N, O [auth a], P [auth g], Q [auth f], R [auth e], S [auth d], T [auth c], U [auth b], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR027439	Protective antigen, heptamerisation domain	Domain
A, AA [auth m], B [auth G], BA [auth n], C [auth F], A, AA [auth m], B [auth G], BA [auth n], C [auth F], D [auth E], E [auth D], F [auth C], G [auth B], H, I, J, K, L, M, N, O [auth a], P [auth g], Q [auth f], R [auth e], S [auth d], T [auth c], U [auth b], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR035088	Protective antigen, Ca-binding domain	Domain
A, AA [auth m], B [auth G], BA [auth n], C [auth F], A, AA [auth m], B [auth G], BA [auth n], C [auth F], D [auth E], E [auth D], F [auth C], G [auth B], H, I, J, K, L, M, N, O [auth a], P [auth g], Q [auth f], R [auth e], S [auth d], T [auth c], U [auth b], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR037149	Protective antigen, heptamerisation domain superfamily	Homologous Superfamily
A, AA [auth m], B [auth G], BA [auth n], C [auth F], A, AA [auth m], B [auth G], BA [auth n], C [auth F], D [auth E], E [auth D], F [auth C], G [auth B], H, I, J, K, L, M, N, O [auth a], P [auth g], Q [auth f], R [auth e], S [auth d], T [auth c], U [auth b], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	IPR003896	Bacterial exotoxin B	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, AA [auth m], B [auth G], BA [auth n], C [auth F] A, AA [auth m], B [auth G], BA [auth n], C [auth F], D [auth E], E [auth D], F [auth C], G [auth B], H, I, J, K, L, M, N, O [auth a], P [auth g], Q [auth f], R [auth e], S [auth d], T [auth c], U [auth b], V [auth h], W [auth i], X [auth j], Y [auth k], Z [auth l]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins/Attack Complexes	binary toxin translocase CDTb in asymmetric tetradecamer conformation

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.