Annotations: 6UPH

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6upha_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
E	d6uphe_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
B	d6uphb_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Yeast (Kluyveromyces lactis NRRL Y-1140 ) [TaxId: 284590 ],	SCOPe (2.08)
F	d6uphf_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Yeast (Kluyveromyces lactis NRRL Y-1140 ) [TaxId: 284590 ],	SCOPe (2.08)
C	d6uphc_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Yeast (Kluyveromyces lactis NRRL Y-1140 ) [TaxId: 284590 ],	SCOPe (2.08)
G	d6uphg_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Yeast (Kluyveromyces lactis NRRL Y-1140 ) [TaxId: 284590 ],	SCOPe (2.08)
D	d6uphd_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Yeast (Kluyveromyces lactis NRRL Y-1140 ) [TaxId: 284590 ],	SCOPe (2.08)
H	d6uphh_	All alpha proteins	Histone-fold	Histone-fold	Nucleosome core histones	automated matches	Yeast (Kluyveromyces lactis NRRL Y-1140 ) [TaxId: 284590 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Core histone-like	8070543	3001387	SCOP2B (2021-05-27)
F	SCOP2B Superfamily	Core histone-like	8070543	3001387	SCOP2B (2021-05-27)
C	SCOP2B Superfamily	Core histone-like	8093736	3001387	SCOP2B (2021-05-27)
G	SCOP2 Family	Nucleosome core histones	8093735	4000793	SCOP2 (2021-05-27)
G	SCOP2 Superfamily	Core histone-like	8093736	3001387	SCOP2 (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00125	e6uphA1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
E	PF00125	e6uphE1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
B	PF15511	e6uphB1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF15511	ECOD (1.6)
F	PF15511	e6uphF1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF15511	ECOD (1.6)
C	PF00125,PF16211	e6uphC1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125,PF16211	ECOD (1.6)
G	PF00125,PF16211	e6uphG1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125,PF16211	ECOD (1.6)
D	PF00125	e6uphD1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)
H	PF00125	e6uphH1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: PF00125	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
E	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
B	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
F	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
C	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
G	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
D	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)
H	1.10.20.10	Mainly Alpha	Orthogonal Bundle	Histone, subunit A	Histone, subunit A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, G	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, E	Histone H3-like centromeric protein CSE4	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding binding organic cyclic compound binding centromeric DNA binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	2-micrometer plasmid partitioning plasmid partitioning cellular process plasmid maintenance cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process 2-micrometer plasmid partitioning plasmid partitioning cellular process plasmid maintenance cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process rRNA transcription metabolic process macromolecule metabolic process rRNA metabolic process organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly chromosome organization protein-DNA complex assembly cellular component organization cellular component biogenesis protein-DNA complex organization organelle organization cellular component assembly kinetochore assembly protein-containing complex assembly kinetochore organization cellular component organization or biogenesis centromere complex assembly protein localization protein localization to chromatin cellular localization protein localization to chromosome, centromeric region localization protein localization to chromosome protein localization to organelle cellular macromolecule localization macromolecule localization protein localization to CENP-A containing chromatin mitotic nuclear division organelle fission sister chromatid segregation mitotic cell cycle nuclear division mitotic cell cycle process mitotic sister chromatid segregation nuclear chromosome segregation cell cycle chromosome segregation cell cycle process	intracellular anatomical structure chromosome cellular anatomical entity chromosomal region intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region condensed chromosome non-membrane-bounded organelle 2-micrometer circle DNA extrachromosomal circular DNA extrachromosomal DNA intracellular anatomical structure chromosome cellular anatomical entity chromosomal region intracellular organelle organelle intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region condensed chromosome non-membrane-bounded organelle 2-micrometer circle DNA extrachromosomal circular DNA extrachromosomal DNA protein-containing complex CENP-A containing chromatin protein-DNA complex nucleosome chromatin chromosome, centromeric core domain CENP-A containing nucleosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B, F	Histone H4	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization	protein-containing complex intracellular anatomical structure CENP-A containing chromatin protein-DNA complex nucleosome chromosome chromatin cellular anatomical entity chromosomal region intracellular organelle chromosome, centromeric core domain CENP-A containing nucleosome organelle intracellular non-membrane-bounded organelle protein-containing complex intracellular anatomical structure CENP-A containing chromatin protein-DNA complex nucleosome chromosome chromatin cellular anatomical entity chromosomal region intracellular organelle chromosome, centromeric core domain CENP-A containing nucleosome organelle intracellular non-membrane-bounded organelle chromosome, centromeric region non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
C, G	Histone H2A	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair	protein-containing complex intracellular anatomical structure CENP-A containing chromatin protein-DNA complex nucleosome chromosome chromatin cellular anatomical entity chromosomal region intracellular organelle chromosome, centromeric core domain CENP-A containing nucleosome organelle intracellular non-membrane-bounded organelle protein-containing complex intracellular anatomical structure CENP-A containing chromatin protein-DNA complex nucleosome chromosome chromatin cellular anatomical entity chromosomal region intracellular organelle chromosome, centromeric core domain CENP-A containing nucleosome organelle intracellular non-membrane-bounded organelle chromosome, centromeric region non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
D, H	Histone H2B.1	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure CENP-A containing chromatin protein-DNA complex nucleosome chromosome chromatin cellular anatomical entity chromosomal region intracellular organelle chromosome, centromeric core domain CENP-A containing nucleosome organelle intracellular non-membrane-bounded organelle protein-containing complex intracellular anatomical structure CENP-A containing chromatin protein-DNA complex nucleosome chromosome chromatin cellular anatomical entity chromosomal region intracellular organelle chromosome, centromeric core domain CENP-A containing nucleosome organelle intracellular non-membrane-bounded organelle chromosome, centromeric region non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
I	DNA (119-MER)	-	-	-
J	DNA (119-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, E	IPR009072	Histone-fold	Homologous Superfamily
A, E	IPR007125	Histone H2A/H2B/H3	Domain
A, E	IPR000164	Histone H3/CENP-A	Family
B, F	IPR009072	Histone-fold	Homologous Superfamily
B, F	IPR001951	Histone H4	Family
B, F	IPR035425	CENP-T/Histone H4, histone fold	Domain
B, F	IPR019809	Histone H4, conserved site	Conserved Site
C, G	IPR009072	Histone-fold	Homologous Superfamily
C, G	IPR007125	Histone H2A/H2B/H3	Domain
C, G	IPR002119	Histone H2A	Family
C, G	IPR032454	Histone H2A, C-terminal domain	Domain
C, G	IPR032458	Histone H2A conserved site	Conserved Site
D, H	IPR009072	Histone-fold	Homologous Superfamily
D, H	IPR007125	Histone H2A/H2B/H3	Domain
D, H	IPR000558	Histone H2B	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.