6UMG
Crystal structure of erenumab Fab bound to the extracellular domain of CGRP receptor
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Thera-SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | d6umgh_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth L] | d6umgl2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth L] | d6umgl1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
G [auth c] | SCOP2B Superfamily | FnI-like domain | 8091130 | 3000979 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | FnI-like domain | 8091130 | 3000979 | SCOP2B (2021-05-27) |
H [auth r] | SCOP2B Superfamily | RAMP1-like | 8054000 | 3002261 | SCOP2B (2021-05-27) |
D [auth R] | SCOP2B Superfamily | RAMP1-like | 8054000 | 3002261 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | PF07654 | e6umgH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
A [auth H] | PF07686 | e6umgH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth h] | PF07654 | e6umgh1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E [auth h] | PF07686 | e6umgh2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth L] | PF07654 | e6umgL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B [auth L] | PF07686 | e6umgL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth l] | PF07654 | e6umgl1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
F [auth l] | PF07686 | e6umgl2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G [auth c] | PF02793 | e6umgc1 | A: few secondary structure elements | X: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | H: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | T: Hormone receptor domain (HRM, Pfam 02793) | F: PF02793 | ECOD (1.6) |
C | PF02793 | e6umgC1 | A: few secondary structure elements | X: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | H: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | T: Hormone receptor domain (HRM, Pfam 02793) | F: PF02793 | ECOD (1.6) |
H [auth r] | PF04901 | e6umgr1 | A: alpha bundles | X: Receptor activity-modifying protein (RAMP) (From Topology) | H: Receptor activity-modifying protein (RAMP) (From Topology) | T: Receptor activity-modifying protein (RAMP) | F: PF04901 | ECOD (1.6) |
D [auth R] | PF04901 | e6umgR1 | A: alpha bundles | X: Receptor activity-modifying protein (RAMP) (From Topology) | H: Receptor activity-modifying protein (RAMP) (From Topology) | T: Receptor activity-modifying protein (RAMP) | F: PF04901 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth H], E [auth h] | mAb Erenumab, anti-GPCR | VH-CH1 | Homo sapiens (human) | IGHV3-30*03, IGHV3-30*06, IGHV3-30*12, IGHV3-30*19, IGHV3-33*05, IGHJ3*01, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_LAMBDA | IMGT (202428-2) |
B [auth L], F [auth l] | mAb Erenumab, anti-GPCR | L-LAMBDA | Homo sapiens (human) | IGLV1-51*01, IGLJ2*01, IGLJ3*01, IGLC1*02 | V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA | IG | FAB-GAMMA-1_LAMBDA | IMGT (202428-2) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth H], E [auth h] | Heavy Chain | IGHV3 | - | calcitonin gene-related peptide type 1 receptor | receptor activity-modifying protein 1, unknown | unknown | SAbDab (2024-07-12) |
B [auth L], F [auth l] | Light Chain | IGLV1 | Lambda | calcitonin gene-related peptide type 1 receptor | receptor activity-modifying protein 1, unknown | unknown | SAbDab (2024-07-12) |
Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage
Chain | Name | Target | Provenance Source |
---|---|---|---|
A [auth H], E [auth h] | Erenumab | CALCRL | Therapeutic SAbDab (2024-07-12) |
B [auth L], F [auth l] | Erenumab | CALCRL | Therapeutic SAbDab (2024-07-12) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C, G [auth c] | PF02793 | Hormone receptor domain (HRM) | Hormone receptor domain | - | Family |
D [auth R], H [auth r] | PF04901 | Receptor activity modifying family (RAMP) | Receptor activity modifying family | - | Family |