6UIA
Structure of ATP citrate lyase with CoA in a partially open conformation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | Succinyl-CoA synthetase domain-like | 8053666 | 3000003 | SCOP2B (2021-05-27) |
A [auth C] | SCOP2B Superfamily | Succinyl-CoA synthetase domain-like | 8053668 | 3000003 | SCOP2B (2021-05-27) |
A [auth C] | SCOP2B Superfamily | CoA-binding Rossmann-fold domain | 8053670 | 3000049 | SCOP2B (2021-05-27) |
A [auth C] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8053676 | 3000094 | SCOP2B (2021-05-27) |
B [auth D] | SCOP2B Superfamily | Succinyl-CoA synthetase domain-like | 8053666 | 3000003 | SCOP2B (2021-05-27) |
B [auth D] | SCOP2B Superfamily | CoA-binding Rossmann-fold domain | 8053670 | 3000049 | SCOP2B (2021-05-27) |
B [auth D] | SCOP2B Superfamily | Succinyl-CoA synthetase domain-like | 8053668 | 3000003 | SCOP2B (2021-05-27) |
B [auth D] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8053676 | 3000094 | SCOP2B (2021-05-27) |
C [auth A] | SCOP2B Superfamily | Succinyl-CoA synthetase domain-like | 8053668 | 3000003 | SCOP2B (2021-05-27) |
C [auth A] | SCOP2B Superfamily | Succinyl-CoA synthetase domain-like | 8053666 | 3000003 | SCOP2B (2021-05-27) |
C [auth A] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8053676 | 3000094 | SCOP2B (2021-05-27) |
C [auth A] | SCOP2B Superfamily | CoA-binding Rossmann-fold domain | 8053670 | 3000049 | SCOP2B (2021-05-27) |
D [auth B] | SCOP2B Superfamily | Succinyl-CoA synthetase domain-like | 8053666 | 3000003 | SCOP2B (2021-05-27) |
D [auth B] | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8053676 | 3000094 | SCOP2B (2021-05-27) |
D [auth B] | SCOP2B Superfamily | Succinyl-CoA synthetase domain-like | 8053668 | 3000003 | SCOP2B (2021-05-27) |
D [auth B] | SCOP2B Superfamily | CoA-binding Rossmann-fold domain | 8053670 | 3000049 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF00285 | e6uiaC1 | A: alpha complex topology | X: Citrate synthase-like | H: Citrate synthase (From Topology) | T: Citrate synthase | F: PF00285 | ECOD (1.6) |
A [auth C] | F_UNCLASSIFIED | e6uiaC2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth C] | PF02629 | e6uiaC5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: PF02629 | ECOD (1.6) |
A [auth C] | PF00549 | e6uiaC3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Succinyl-CoA synthetase domains (From Topology) | T: Succinyl-CoA synthetase domains | F: PF00549 | ECOD (1.6) |
A [auth C] | PF16114 | e6uiaC4 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Succinyl-CoA synthetase domains (From Topology) | T: Succinyl-CoA synthetase domains | F: PF16114 | ECOD (1.6) |
B [auth D] | PF00285 | e6uiaD1 | A: alpha complex topology | X: Citrate synthase-like | H: Citrate synthase (From Topology) | T: Citrate synthase | F: PF00285 | ECOD (1.6) |
B [auth D] | F_UNCLASSIFIED | e6uiaD2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth D] | PF02629 | e6uiaD5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: PF02629 | ECOD (1.6) |
B [auth D] | PF00549 | e6uiaD3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Succinyl-CoA synthetase domains (From Topology) | T: Succinyl-CoA synthetase domains | F: PF00549 | ECOD (1.6) |
B [auth D] | PF16114 | e6uiaD4 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Succinyl-CoA synthetase domains (From Topology) | T: Succinyl-CoA synthetase domains | F: PF16114 | ECOD (1.6) |
C [auth A] | PF00285 | e6uiaA1 | A: alpha complex topology | X: Citrate synthase-like | H: Citrate synthase (From Topology) | T: Citrate synthase | F: PF00285 | ECOD (1.6) |
C [auth A] | F_UNCLASSIFIED | e6uiaA2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth A] | PF02629 | e6uiaA5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: PF02629 | ECOD (1.6) |
C [auth A] | PF00549 | e6uiaA3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Succinyl-CoA synthetase domains (From Topology) | T: Succinyl-CoA synthetase domains | F: PF00549 | ECOD (1.6) |
C [auth A] | PF16114 | e6uiaA4 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Succinyl-CoA synthetase domains (From Topology) | T: Succinyl-CoA synthetase domains | F: PF16114 | ECOD (1.6) |
D [auth B] | PF00285 | e6uiaB1 | A: alpha complex topology | X: Citrate synthase-like | H: Citrate synthase (From Topology) | T: Citrate synthase | F: PF00285 | ECOD (1.6) |
D [auth B] | F_UNCLASSIFIED | e6uiaB2 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth B] | PF02629 | e6uiaB5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: PF02629 | ECOD (1.6) |
D [auth B] | PF00549 | e6uiaB3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Succinyl-CoA synthetase domains (From Topology) | T: Succinyl-CoA synthetase domains | F: PF00549 | ECOD (1.6) |
D [auth B] | PF16114 | e6uiaB4 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Succinyl-CoA synthetase domains (From Topology) | T: Succinyl-CoA synthetase domains | F: PF16114 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth D], C [auth A], D [auth B] | PF02629 | CoA binding domain (CoA_binding) | CoA binding domain | This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. | Domain |
A [auth C], B [auth D], C [auth A], D [auth B] | PF00549 | CoA-ligase (Ligase_CoA) | CoA-ligase | This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilise ATP others use GTP. | Domain |
A [auth C], B [auth D], C [auth A], D [auth B] | PF16114 | ATP citrate lyase citrate-binding (Citrate_bind) | ATP citrate lyase citrate-binding | This is the citrate-binding domain of ATP citrate lyase. This domain has a Rossmann fold [1]. | Domain |
A [auth C], B [auth D], C [auth A], D [auth B] | PF00285 | Citrate synthase, C-terminal domain (Citrate_synt) | Citrate synthase, C-terminal domain | This is the long, C-terminal part of the enzyme. | Domain |