6UEO

Structure of A. thaliana TBP-AC mismatch DNA site

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	TATA-box binding protein-like	8036311	3000705	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	TATA-box binding protein-like	8036314	3000705	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TBP	e6ueoA1	A: a+b two layers	X: TBP-like	H: TATA-box binding protein-like (From Topology)	T: TATA-box binding protein-like	F: TBP	ECOD (1.6)
D	TBP	e6ueoD2	A: a+b two layers	X: TBP-like	H: TATA-box binding protein-like (From Topology)	T: TATA-box binding protein-like	F: TBP	ECOD (1.6)
G	TBP	e6ueoG2	A: a+b two layers	X: TBP-like	H: TATA-box binding protein-like (From Topology)	T: TATA-box binding protein-like	F: TBP	ECOD (1.6)
J	TBP	e6ueoJ1	A: a+b two layers	X: TBP-like	H: TATA-box binding protein-like (From Topology)	T: TATA-box binding protein-like	F: TBP	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D, G, J	PF00352	Transcription factor TFIID (or TATA-binding protein, TBP) (TBP)	Transcription factor TFIID (or TATA-binding protein, TBP)	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D, G, J	TATA-box-binding protein 1	DNA binding binding organic cyclic compound binding nucleic acid binding	cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity
B, E, H, K	DNA (5'-D(GPCPTPAPTPAPAPAPAPGPGPGPCPA)-3')	-	-	-
C, F, I, L	DNA (5'-D(TPGPCPCPCPCPTPTPTPAPTPAPGPC)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D, G, J	IPR030491	TATA-box binding protein, conserved site	Conserved Site
A, D, G, J	IPR000814	TATA-box binding protein	Family
A, D, G, J	IPR012295	TBP domain superfamily	Homologous Superfamily
A, D, G, J	IPR033710	TATA-box binding protein, eukaryotic	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.