6U3U
Crystal Structure of Shiga Toxin 2K
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Ribosome inactivating proteins (RIP) | 8093804 | 3001164 | SCOP2B (2022-06-29) |
G [auth A] | SCOP2 Family | Shiga toxin, A-chain | 8093803 | 4002413 | SCOP2 (2022-06-29) |
G [auth A] | SCOP2 Superfamily | Ribosome inactivating proteins (RIP) | 8093804 | 3001164 | SCOP2 (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Bacterial enterotoxins | 8093814 | 3000434 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Bacterial enterotoxins | 8093814 | 3000434 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Bacterial enterotoxins | 8093814 | 3000434 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | Bacterial enterotoxins | 8093814 | 3000434 | SCOP2B (2022-06-29) |
F [auth I] | SCOP2B Superfamily | Bacterial enterotoxins | 8093814 | 3000434 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | Bacterial enterotoxins | 8093814 | 3000434 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2B Superfamily | Bacterial enterotoxins | 8093814 | 3000434 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Bacterial enterotoxins | 8093814 | 3000434 | SCOP2B (2022-06-29) |
K | SCOP2 Family | Bacterial AB5 toxins, B-subunits | 8093813 | 4001827 | SCOP2 (2022-06-29) |
K | SCOP2 Superfamily | Bacterial enterotoxins | 8093814 | 3000434 | SCOP2 (2022-06-29) |
L | SCOP2B Superfamily | Bacterial enterotoxins | 8093814 | 3000434 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | RIP | e6u3uB1 | A: a+b two layers | X: RIP/Polo-box domain | H: Ribosome inactivating proteins (RIP) (From Topology) | T: Ribosome inactivating proteins (RIP) | F: RIP | ECOD (1.6) |
G [auth A] | RIP | e6u3uA1 | A: a+b two layers | X: RIP/Polo-box domain | H: Ribosome inactivating proteins (RIP) (From Topology) | T: Ribosome inactivating proteins (RIP) | F: RIP | ECOD (1.6) |
B [auth C] | SLT_beta | e6u3uC1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SLT_beta | ECOD (1.6) |
C [auth D] | SLT_beta | e6u3uD1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SLT_beta | ECOD (1.6) |
D [auth E] | SLT_beta | e6u3uE1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SLT_beta | ECOD (1.6) |
E [auth H] | SLT_beta | e6u3uH1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SLT_beta | ECOD (1.6) |
F [auth I] | SLT_beta | e6u3uI1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SLT_beta | ECOD (1.6) |
H [auth F] | SLT_beta | e6u3uF1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SLT_beta | ECOD (1.6) |
I [auth G] | SLT_beta | e6u3uG1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SLT_beta | ECOD (1.6) |
J | SLT_beta | e6u3uJ1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SLT_beta | ECOD (1.6) |
K | SLT_beta | e6u3uK1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SLT_beta | ECOD (1.6) |
L | SLT_beta | e6u3uL1 | A: beta barrels | X: OB-fold | H: Bacterial enterotoxins (From Topology) | T: Bacterial enterotoxins | F: SLT_beta | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], G [auth A] | PF00161 | Ribosome inactivating protein (RIP) | Ribosome inactivating protein | - | Domain |
PF02258 | Shiga-like toxin beta subunit (SLT_beta) | Shiga-like toxin beta subunit | This family represents the B subunit of shiga-like toxin (SLT or verotoxin) produced by some strains of E.coli associated with hemorrhagic colitis and hemolytic uremic syndrome. SLT's are composed of one enzymatic A subunit and five cell binding B s ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], G [auth A] | IPR036041 | Ribosome-inactivating protein superfamily | Homologous Superfamily |
A [auth B], G [auth A] | IPR016331 | Shiga-like toxin, subunit A | Family |
A [auth B], G [auth A] | IPR017988 | Ribosome-inactivating protein conserved site | Conserved Site |
A [auth B], G [auth A] | IPR016139 | Ribosome-inactivating protein, subdomain 2 | Homologous Superfamily |
A [auth B], G [auth A] | IPR016138 | Ribosome-inactivating protein, subdomain 1 | Homologous Superfamily |
A [auth B], G [auth A] | IPR001574 | Ribosome-inactivating protein | Family |
IPR008992 | Enterotoxin | Homologous Superfamily | |
IPR003189 | Shiga-like toxin, beta subunit | Family |