6U20
AAV8 human HEK293-produced, empty capsid
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ssDNA viruses | 8071440 | 3000931 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00740 | e6u20A1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00740 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.170.30.10 | Mainly Beta | Beta Complex | Empty Capsid Viral Protein 2 | Parvovirus coat protein VP1/VP2 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00740 | Parvovirus coat protein VP2 (Parvo_coat) | Parvovirus coat protein VP2 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Capsid protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013607 | Phospholipase A2-like domain | Domain | |
IPR016184 | Capsid/spike protein, ssDNA virus | Homologous Superfamily | |
IPR036952 | Parvovirus coat protein VP1/VP2 | Homologous Superfamily | |
IPR001403 | Parvovirus coat protein VP2 | Domain |