6T8H
Cryo-EM structure of the DNA-bound PolD-PCNA processive complex from P. abyssi
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth A] | SCOP2B Superfamily | Metallo-dependent phosphatases | 8053389 | 3001067 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8053391 | 3000135 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8055689 | 3001330 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth C] | PF00705 | e6t8hC2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
D [auth C] | PF02747 | e6t8hC1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
E [auth D] | PF00705 | e6t8hD2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
E [auth D] | PF02747 | e6t8hD1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
A [auth E] | PF00705 | e6t8hE2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
A [auth E] | PF02747 | e6t8hE1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
B [auth A] | PF01336 | e6t8hA1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01336 | ECOD (1.6) |
B [auth A] | PF04042 | e6t8hA2 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF04042 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth C] | 3.70.10.10 | Alpha Beta | Box | Proliferating Cell Nuclear Antigen | CATH (utative) | |
E [auth D] | 3.70.10.10 | Alpha Beta | Box | Proliferating Cell Nuclear Antigen | CATH (utative) | |
A [auth E] | 3.70.10.10 | Alpha Beta | Box | Proliferating Cell Nuclear Antigen | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E], D [auth C], E [auth D] | PF02747 | Proliferating cell nuclear antigen, C-terminal domain (PCNA_C) | Proliferating cell nuclear antigen, C-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain |
A [auth E], D [auth C], E [auth D] | PF00705 | Proliferating cell nuclear antigen, N-terminal domain (PCNA_N) | Proliferating cell nuclear antigen, N-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain |
B [auth A] | PF00149 | Calcineurin-like phosphoesterase (Metallophos) | Calcineurin-like phosphoesterase | This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or ... | Domain |
C [auth B] | PF03833 | DNA polymerase II large subunit DP2 (PolC_DP2) | DNA polymerase II large subunit DP2 | - | Family |