6T8F
Crystal structure of mutant xylose isomerase (V270A/A273G) from Piromyces E2 grown in yeast, in complex with xylose
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6t8fa_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Xylose isomerase-like | automated matches | automated matches | (Piromyces sp. E2 ) [TaxId: 73868 ], | SCOPe (2.08) |
D | d6t8fd_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Xylose isomerase-like | automated matches | automated matches | (Piromyces sp. E2 ) [TaxId: 73868 ], | SCOPe (2.08) |
B | d6t8fb_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Xylose isomerase-like | automated matches | automated matches | (Piromyces sp. E2 ) [TaxId: 73868 ], | SCOPe (2.08) |
C | d6t8fc_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Xylose isomerase-like | automated matches | automated matches | (Piromyces sp. E2 ) [TaxId: 73868 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Xylose isomerase-like | 8078202 | 3000560 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Xylose isomerase-like | 8078202 | 3000560 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Xylose isomerase-like | 8078202 | 3000560 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Xylose isomerase-like | 8078202 | 3000560 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01261 | e6t8fA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01261 | ECOD (1.6) |
D | PF01261 | e6t8fD1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01261 | ECOD (1.6) |
B | PF01261 | e6t8fB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01261 | ECOD (1.6) |
C | PF01261 | e6t8fC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01261 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (utative) |
D | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (utative) |
B | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (utative) |
C | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01261 | Xylose isomerase-like TIM barrel (AP_endonuc_2) | Xylose isomerase-like TIM barrel | This TIM alpha/beta barrel structure is found in xylose isomerase (Swiss:P19148) and in endonuclease IV (Swiss:P12638, EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the ... | Domain |