6T7J

As-isolated Ni-free crystal structure of carbon monoxide dehydrogenase from Thermococcus sp. AM4 produced without CooC maturase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth B]	d6t7jb_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	automated matches	automated matches	(Thermococcus sp. AM4 ) [TaxId: 246969 ],	SCOPe (2.08)
B [auth A]	d6t7ja_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	automated matches	automated matches	(Thermococcus sp. AM4 ) [TaxId: 246969 ],	SCOPe (2.08)
C [auth D]	d6t7jd_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	automated matches	automated matches	(Thermococcus sp. AM4 ) [TaxId: 246969 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	Prismane_2nd	e6t7jB1	A: alpha bundles	X: Helical bundle domain in prismane-like proteins (From Topology)	H: Helical bundle domain in prismane-like proteins (From Topology)	T: Helical bundle domain in prismane-like proteins	F: Prismane_2nd	ECOD (1.6)
A [auth B]	Prismane_4th	e6t7jB2	A: a/b three-layered sandwiches	X: Rossmann-like domain in prismane-like proteins (From Topology)	H: Rossmann-like domain in prismane-like proteins (From Topology)	T: Rossmann-like domain in prismane-like proteins	F: Prismane_4th	ECOD (1.6)
A [auth B]	Prismane_3rd	e6t7jB3	A: a/b three-layered sandwiches	X: Rossmann-like domain in prismane-like proteins (From Topology)	H: Rossmann-like domain in prismane-like proteins (From Topology)	T: Rossmann-like domain in prismane-like proteins	F: Prismane_3rd	ECOD (1.6)
A [auth B]	CODH	e6t7jB4	A: few secondary structure elements	X: Fe-binding domain in prismane-like proteins (From Topology)	H: Fe-binding domain in prismane-like proteins (From Topology)	T: Fe-binding domain in prismane-like proteins	F: CODH	ECOD (1.6)
B [auth A]	Prismane_2nd	e6t7jA2	A: alpha bundles	X: Helical bundle domain in prismane-like proteins (From Topology)	H: Helical bundle domain in prismane-like proteins (From Topology)	T: Helical bundle domain in prismane-like proteins	F: Prismane_2nd	ECOD (1.6)
B [auth A]	Prismane_4th	e6t7jA3	A: a/b three-layered sandwiches	X: Rossmann-like domain in prismane-like proteins (From Topology)	H: Rossmann-like domain in prismane-like proteins (From Topology)	T: Rossmann-like domain in prismane-like proteins	F: Prismane_4th	ECOD (1.6)
B [auth A]	Prismane_3rd	e6t7jA4	A: a/b three-layered sandwiches	X: Rossmann-like domain in prismane-like proteins (From Topology)	H: Rossmann-like domain in prismane-like proteins (From Topology)	T: Rossmann-like domain in prismane-like proteins	F: Prismane_3rd	ECOD (1.6)
B [auth A]	CODH	e6t7jA1	A: few secondary structure elements	X: Fe-binding domain in prismane-like proteins (From Topology)	H: Fe-binding domain in prismane-like proteins (From Topology)	T: Fe-binding domain in prismane-like proteins	F: CODH	ECOD (1.6)
C [auth D]	Prismane_2nd	e6t7jD4	A: alpha bundles	X: Helical bundle domain in prismane-like proteins (From Topology)	H: Helical bundle domain in prismane-like proteins (From Topology)	T: Helical bundle domain in prismane-like proteins	F: Prismane_2nd	ECOD (1.6)
C [auth D]	Prismane_4th	e6t7jD1	A: a/b three-layered sandwiches	X: Rossmann-like domain in prismane-like proteins (From Topology)	H: Rossmann-like domain in prismane-like proteins (From Topology)	T: Rossmann-like domain in prismane-like proteins	F: Prismane_4th	ECOD (1.6)
C [auth D]	Prismane_3rd	e6t7jD3	A: a/b three-layered sandwiches	X: Rossmann-like domain in prismane-like proteins (From Topology)	H: Rossmann-like domain in prismane-like proteins (From Topology)	T: Rossmann-like domain in prismane-like proteins	F: Prismane_3rd	ECOD (1.6)
C [auth D]	CODH	e6t7jD2	A: few secondary structure elements	X: Fe-binding domain in prismane-like proteins (From Topology)	H: Fe-binding domain in prismane-like proteins (From Topology)	T: Fe-binding domain in prismane-like proteins	F: CODH	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C [auth D]	PF03063	Prismane/CO dehydrogenase family (Prismane)	Prismane/CO dehydrogenase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C [auth D]	Carbon monoxide dehydrogenase	anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding metal cluster binding peroxidase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor hydroxylamine reductase activity oxidoreductase activity, acting on other nitrogenous compounds as donors 4 iron, 4 sulfur cluster binding	cellular metabolic process metabolic process cellular process generation of precursor metabolites and energy response to hydrogen peroxide response to oxidative stress response to stimulus response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C [auth D]	IPR016099	Prismane-like, alpha/beta-sandwich	Homologous Superfamily
A [auth B], B [auth A], C [auth D]	IPR004137	Hydroxylamine reductase/Ni-containing CO dehydrogenase	Family
A [auth B], B [auth A], C [auth D]	IPR016101	CO dehydrogenase, alpha-bundle	Homologous Superfamily
A [auth B], B [auth A], C [auth D]	IPR010047	Ni-containing CO dehydrogenase	Family
A [auth B], B [auth A], C [auth D]	IPR011254	Prismane-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.