6T3F
Crystal structure Nipah virus fusion glycoprotein in complex with a neutralising Fab fragment
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth F] | SCOP2B Superfamily | Virus ectodomain | 8072297 | 3001628 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth F] | Fusion_gly_4 | e6t3fF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-like domain in paramyxoviruses fusion protein (From Topology) | T: Immunoglobulin-like domain in paramyxoviruses fusion protein | F: Fusion_gly_4 | ECOD (1.6) |
A [auth F] | Fusion_gly | e6t3fF1 | A: a+b complex topology | X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein (From Topology) | H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein (From Topology) | T: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein | F: Fusion_gly | ECOD (1.6) |
B [auth L] | C1-set | e6t3fL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
B [auth L] | V-set | e6t3fL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C [auth H] | C1-set_1 | e6t3fH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth H] | V-set_12 | e6t3fH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
C [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth L] | mAb 66, anti-NiV-F DIII domain | L-KAPPA | Oryctolagus cuniculus (rabbit) | IGKV1S3*02, IGKJ1-2*02, IGKJ1-2*01, IGKC1*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
C [auth H] | mAb 66, anti-NiV-F DIII domain | VH-CH1 | Oryctolagus cuniculus (rabbit) | IGHV1S43*01, IGHJ6*02, IGHG*01, IGHG*05, IGHG*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth L] | Light Chain | IGKV1 | Kappa | fusion glycoprotein f0 | SAbDab (2024-09-13) |
C [auth H] | Heavy Chain | IGHV1 | - | fusion glycoprotein f0 | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth F] | PF00523 | Fusion glycoprotein F0 (Fusion_gly) | Fusion glycoprotein F0 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth F] | Fusion glycoprotein F0 | - |
| |
B [auth L] | Fab66 light chain | - | - | - |
C [auth H] | Fab66 heavy chain | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth F] | IPR000776 | Precursor fusion glycoprotein F0, Paramyxoviridae | Family |