6SWE
IC2 head of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth X] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8093620 | 3000135 | SCOP2B (2022-06-29) |
K [auth Y] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8094739 | 3001320 | SCOP2B (2022-06-29) |
M [auth 3] | SCOP2B Superfamily | L30e-like | 8063952 | 3001739 | SCOP2B (2022-06-29) |
O [auth 6] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8085842 | 3000135 | SCOP2B (2022-06-29) |
B [auth H] | SCOP2 Family | Ribosomal protein S7 | 8094314 | 4001112 | SCOP2 (2022-06-29) |
B [auth H] | SCOP2 Superfamily | Ribosomal protein S7 | 8094315 | 3000799 | SCOP2 (2022-06-29) |
C [auth K] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8100690 | 3000100 | SCOP2B (2022-06-29) |
D [auth L] | SCOP2 Family | Ribosomal protein S10 | 8100687 | 4001240 | SCOP2 (2022-06-29) |
D [auth L] | SCOP2 Superfamily | Ribosomal protein S10 | 8100688 | 3001336 | SCOP2 (2022-06-29) |
E [auth O] | SCOP2B Superfamily | S13-like H2TH domain | 8100692 | 3000053 | SCOP2B (2022-06-29) |
F [auth P] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8093756 | 3000068 | SCOP2B (2022-06-29) |
G [auth S] | SCOP2B Superfamily | Rps17e-like | 8095357 | 3001852 | SCOP2B (2022-06-29) |
I [auth U] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003150 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth X] | Ribosomal_S28e | e6sweX1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S28e | ECOD (1.6) |
K [auth Y] | Ribosomal_S27 | e6sweY1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27 | ECOD (1.6) |
L [auth Z] | Ribosomal_S3_C | e6sweZ2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
L [auth Z] | KH_2_2 | e6sweZ1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_2 | ECOD (1.6) |
M [auth 3] | Ribosomal_L7Ae_1 | e6swe31 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
O [auth 6] | eIF-1a | e6swe61 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: eIF-1a | ECOD (1.6) |
B [auth H] | Ribosomal_S7 | e6sweH1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7 | ECOD (1.6) |
C [auth K] | Ribosomal_S9 | e6sweK1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
D [auth L] | Ribosomal_S10_1 | e6sweL1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_1 | ECOD (1.6) |
E [auth O] | Ribosomal_S13 | e6sweO1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13 | ECOD (1.6) |
F [auth P] | Ribosomal_S14_2 | e6sweP1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_2 | ECOD (1.6) |
G [auth S] | Ribosomal_S17e | e6sweS1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: Ribosomal_S17e | ECOD (1.6) |
H [auth T] | Ribosomal_S19 | e6sweT1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
I [auth U] | Ribosomal_S19e | e6sweU1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S19e | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
J [auth X] | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (utative) |
M [auth 3] | 3.30.1330.30 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (utative) |
O [auth 6] | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (utative) |
B [auth H] | 1.10.455.10 | Mainly Alpha | Orthogonal Bundle | Ribosomal Protein S7 | Ribosomal protein S7/S5 | CATH (utative) |
C [auth K] | 3.30.230.10 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S5 | domain 2 | CATH (utative) |
D [auth L] | 3.30.70.600 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Ribosomal protein S10 | CATH (utative) |
F [auth P] | 4.10.830.10 | Few Secondary Structures | Irregular | 30s Ribosomal Protein S14 | Chain N | CATH (utative) |
G [auth S] | 1.10.60.20 | Mainly Alpha | Orthogonal Bundle | Diphtheria Toxin Repressor | domain 2 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
K [auth Y] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
L [auth Z] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
L [auth Z] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
M [auth 3] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
O [auth 6] | PF01176 | Translation initiation factor 1A / IF-1 (eIF-1a) | Translation initiation factor 1A / IF-1 | This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. | Domain |
B [auth H] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
C [auth K] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
D [auth L] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
E [auth O] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
F [auth P] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
H [auth T] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
I [auth U] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |