Structure of the RagAB peptide transporter
External Resource: Annotation
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A [auth B] | UNK_F_TYPE | e6sljB1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: UNK_F_TYPE | ECOD (1.6) |
A [auth B] | Plug | e6sljB2 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: Plug | ECOD (1.6) |
B [auth A] | UNK_F_TYPE | e6sljA1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: UNK_F_TYPE | ECOD (1.6) |
B [auth A] | Plug | e6sljA2 | A: a+b complex topology | X: N0 domain in phage tail proteins and secretins-like | H: TonB-dependent receptor plug domain (From Topology) | T: TonB-dependent receptor plug domain | F: Plug | ECOD (1.6) |
C | SusD_RagB | e6sljC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: SusD_RagB | ECOD (1.6) |
D | SusD_RagB | e6sljD1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: SusD_RagB | ECOD (1.6) |
Chains | Accession | Name | Description | Comments | Source |
---|
A [auth B], B [auth A] | PF00593 | TonB dependent receptor-like, beta-barrel (TonB_dep_Rec_b-barrel) | TonB dependent receptor-like, beta-barrel | This entry represents the beta-barrel domain of TonB-dependent receptors, such as BtuB, CirA, FatA, FcuT, FecA, FepA, among others [1]. | Domain |
| PF07980 | SusD family (SusD_RagB) | SusD family | - | Repeat |
| PF14322 | Starch-binding associating with outer membrane (SusD-like_3) | Starch-binding associating with outer membrane | - | Repeat |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
A [auth B], B [auth A] | RagA protein | - | - | |
| Lipoprotein RagB | - | - | |
E [auth P] | ALA-SER-THR-THR-GLY-ALA-ASN-SER-GLN-ARG-GLY-SER-GLY | - | - | - |
F [auth Q] | ALA-SER-THR-THR-GLY-ALA-ASN-SER-GLN-ARG | - | - | - |
Chains | Accession | Name | Type |
---|
A [auth B], B [auth A] | IPR039426 | TonB-dependent receptor-like | Family |
A [auth B], B [auth A] | IPR037066 | TonB-dependent receptor, plug domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR023997 | TonB-dependent outer membrane protein SusC/RagA, conserved site | Conserved Site |
A [auth B], B [auth A] | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR023996 | TonB-dependent outer membrane protein, SusC/RagA | Family |
A [auth B], B [auth A] | IPR000531 | TonB-dependent receptor-like, beta-barrel | Domain |
A [auth B], B [auth A] | IPR012910 | TonB-dependent receptor, plug domain | Domain |
A [auth B], B [auth A] | IPR008969 | Carboxypeptidase-like, regulatory domain superfamily | Homologous Superfamily |
| IPR012944 | RagB/SusD domain | Domain |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily |
| IPR033985 | SusD-like, N-terminal | Domain |