6SGC

Rabbit 80S ribosome stalled on a poly(A) tail


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth J1]SCOP2B Superfamily50S Ribosomal protein L14-like 8053075 3000433 SCOP2B (2022-06-29)
L [auth L1]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055720 3000034 SCOP2B (2022-06-29)
M [auth M1]SCOP2B SuperfamilyNucleic acid-binding proteins 8052707 3000135 SCOP2B (2022-06-29)
M [auth M1]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052708 3002138 SCOP2B (2022-06-29)
N [auth N1]SCOP2B SuperfamilyL30e-like 8063980 3001739 SCOP2B (2022-06-29)
O [auth O1]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052971 3001284 SCOP2B (2022-06-29)
O [auth O1]SCOP2B SuperfamilyHomeodomain-like 8052970 3000001 SCOP2B (2022-06-29)
R [auth R1]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082683 3000100 SCOP2B (2022-06-29)
T [auth T1]SCOP2B SuperfamilyS13-like H2TH domain 8101439 3000053 SCOP2B (2022-06-29)
U [auth U1]SCOP2B SuperfamilyWinged helix DNA-binding domain 8089322 3000034 SCOP2B (2022-06-29)
V [auth V1]SCOP2B SuperfamilyRibosomal protein S10 8097814 3001336 SCOP2B (2022-06-29)
X [auth X1]SCOP2B SuperfamilyRibosomal protein S8 8079081 3000709 SCOP2B (2022-06-29)
AA [auth a1]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090991 3000034 SCOP2B (2022-06-29)
C [auth C1]SCOP2B SuperfamilyRibosomal S3Ae-like 8053216 3002166 SCOP2B (2022-06-29)
DA [auth d1]SCOP2B SuperfamilyNucleic acid-binding proteins 8095265 3000135 SCOP2B (2022-06-29)
EA [auth e1]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052584 3000068 SCOP2B (2022-06-29)
FA [auth f1]SCOP2B SuperfamilyRibosomal protein S30e-like 8053455 3002190 SCOP2B (2022-06-29)
KA [auth B2]SCOP2B SuperfamilyTranslational proteins 8078357 3000811 SCOP2B (2022-06-29)
RA [auth I2]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8097320 3000884 SCOP2B (2022-06-29)
SA [auth J2]SCOP2B SuperfamilyRL5-like 8073894 3001709 SCOP2B (2022-06-29)
VA [auth N2]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082477 3000210 SCOP2B (2022-06-29)
DB [auth V2]SCOP2B Superfamily50S Ribosomal protein L14-like 8072048 3000433 SCOP2B (2022-06-29)
FB [auth X2]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095966 3000210 SCOP2B (2022-06-29)
GB [auth Y2]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076754 3000334 SCOP2B (2022-06-29)
F [auth F1]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052745 3001473 SCOP2B (2022-06-29)
F [auth F1]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052747 3000334 SCOP2B (2022-06-29)
F [auth F1]SCOP2B SuperfamilyNucleic acid-binding proteins 8052746 3000135 SCOP2B (2022-06-29)
HB [auth Z2]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053047 3000334 SCOP2B (2022-06-29)
IB [auth a2]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8097818 3001045 SCOP2B (2022-06-29)
KB [auth c2]SCOP2B SuperfamilyL30e-like 8094953 3001739 SCOP2B (2022-06-29)
MB [auth e2]SCOP2B SuperfamilyRibosomal protein L32e 8102088 3000982 SCOP2B (2022-06-29)
NB [auth f2]SCOP2B SuperfamilyTranslational proteins 8093714 3000811 SCOP2B (2022-06-29)
OB [auth g2]SCOP2B SuperfamilyRibosomal protein L34e-like 8103328 3002203 SCOP2B (2022-06-29)
QB [auth i2]SCOP2B SuperfamilyRibosomal protein L36e 8053119 3002161 SCOP2B (2022-06-29)
G [auth G1]SCOP2B SuperfamilyRibosomal protein S7 8066001 3000799 SCOP2B (2022-06-29)
SB [auth k2]SCOP2B SuperfamilyRibosomal L38e protein-like 8093716 3002206 SCOP2B (2022-06-29)
TB [auth l2]SCOP2 Familyribosomal protein l39e 8095596 4001518 SCOP2 (2022-06-29)
TB [auth l2]SCOP2 SuperfamilyRibosomal protein L39e 8095597 3001756 SCOP2 (2022-06-29)
XB [auth p2]SCOP2B SuperfamilyZn-binding ribosomal proteins 8101435 3001320 SCOP2B (2022-06-29)
FC [auth B]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like 8065344 3001911 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth J1]Ribosomal_S8ee6sgcJ11 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
K [auth K1]S4e6sgcK11 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
L [auth L1]S10_plectine6sgcL11 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
M [auth M1]Ribosomal_S17_1e6sgcM11 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
N [auth N1]Ribosomal_L7Aee6sgcN11 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
O [auth O1]Ribosomal_S13_Ne6sgcO12 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
O [auth O1]Ribosomal_S15_2e6sgcO11 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
P [auth P1]Ribosomal_S11e6sgcP11 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
Q [auth Q1]Ribosomal_S19e6sgcQ11 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
R [auth R1]Ribosomal_S9e6sgcR11 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
S [auth S1]Ribosomal_S17ee6sgcS11 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
B [auth B1]Ribosomal_S2_2e6sgcB11 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
T [auth T1]Ribosomal_S13e6sgcT11 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
U [auth U1]Ribosomal_S19ee6sgcU11 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
V [auth V1]Ribosomal_S10_1e6sgcV11 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
W [auth W1]Ribosomal_S21ee6sgcW11 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
X [auth X1]Ribosomal_S8_N_1e6sgcX11 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
X [auth X1]Ribosomal_S8_C_1e6sgcX12 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
Y [auth Y1]Ribosom_S12_S23e6sgcY11 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
Z [auth Z1]Ribosomal_S24ee6sgcZ11 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
AA [auth a1]Ribosomal_S25e6sgca11 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
BA [auth b1]Ribosomal_S26ee6sgcb11 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
CA [auth c1]Ribosomal_S27ee6sgcc11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
C [auth C1]Ribosomal_S3Ae_Ne6sgcC12 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
C [auth C1]Ribosomal_S3Ae_Ce6sgcC11 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
DA [auth d1]Ribosomal_S28ee6sgcd11 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
EA [auth e1]Ribosomal_S14_2e6sgce11 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
FA [auth f1]Ribosomal_S30e6sgcf11 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
GA [auth g1]Ribosomal_S27e6sgcg11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
HA [auth h1]DUF1899e6sgch11 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
JA [auth A2]Ribosomal_L2_1e6sgcA21 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
JA [auth A2]Ribosomal_L2_C_2e6sgcA22 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
KA [auth B2]Ribosomal_L3e6sgcB21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
LA [auth C2]Ribosomal_L4e6sgcC22 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
LA [auth C2]Ribos_L4_asso_Ce6sgcC21 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
MA [auth D2]Ribosomal_L5ee6sgcD21 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
D [auth D1]Ribosomal_S5_C_1e6sgcD12 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
D [auth D1]Ribosomal_S5_3e6sgcD11 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
D [auth D1]Ribosomal_S5_2e6sgcD13 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
NA [auth E2]Ribosomal_L6ee6sgcE21 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
OA [auth F2]Ribosomal_L30_1e6sgcF21 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
PA [auth G2]Ribosomal_L7Ae_1e6sgcG21 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
QA [auth H2]Ribosomal_L6_2e6sgcH22 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
QA [auth H2]Ribosomal_L6e6sgcH21 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
RA [auth I2]Ribosomal_L16e6sgcI21 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
SA [auth J2]Ribosomal_L5_Ce6sgcJ21 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
TA [auth L2]Ribosomal_L13ee6sgcL21 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
UA [auth M2]Ribosomal_L14ee6sgcM21 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
VA [auth N2]Ribosomal_L15ee6sgcN21 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
WA [auth O2]Ribosomal_L13e6sgcO21 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
E [auth E1]Ribosomal_S3_Ce6sgcE11 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
E [auth E1]KH_2_3e6sgcE12 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
XA [auth P2]Ribosomal_L22e6sgcP21 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
YA [auth Q2]Ribosomal_L18e6sgcQ21 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
ZA [auth R2]Ribosomal_L19e_Ne6sgcR22 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
ZA [auth R2]Ribosomal_L19e_Ce6sgcR21 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
AB [auth S2]Ribosomal_L18Ae6sgcS21 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
BB [auth T2]Ribosomal_L21ee6sgcT21 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
CB [auth U2]Ribosomal_L22ee6sgcU21 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
DB [auth V2]Ribosomal_L14e6sgcV21 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
EB [auth W2]Ribosomal_L24ee6sgcW21 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
FB [auth X2]Ribosomal_L23_3e6sgcX21 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
GB [auth Y2]Ribosomal_L26e6sgcY21 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
F [auth F1]Ribosomal_S4ee6sgcF12 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
F [auth F1]40S_S4_Ce6sgcF11 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
F [auth F1]RS4NTe6sgcF13 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
HB [auth Z2]Ribosomal_L27ee6sgcZ21 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
IB [auth a2]Ribosomal_L18e6sgca21 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
JB [auth b2]Ribosomal_L29ee6sgcb21 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
KB [auth c2]Ribosomal_L7Aee6sgcc21 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
LB [auth d2]Ribosomal_L31ee6sgcd21 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
MB [auth e2]Ribosomal_L32ee6sgce21 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
NB [auth f2]Ribosomal_L35Aee6sgcf21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
OB [auth g2]Ribosomal_L34ee6sgcg21 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
PB [auth h2]Ribosomal_L29_2e6sgch21 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
QB [auth i2]Ribosomal_L36ee6sgci21 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
G [auth G1]Ribosomal_S7_1e6sgcG11 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
RB [auth j2]Ribosomal_L37ee6sgcj21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
SB [auth k2]Ribosomal_L38ee6sgck21 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
TB [auth l2]Ribosomal_L39e6sgcl21 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
UB [auth m2]Ribosomal_L40ee6sgcm21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
VB [auth n2]Ribosomal_L41e6sgcn21 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
WB [auth o2]Ribosomal_L44e6sgco21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
XB [auth p2]Ribosomal_L37aee6sgcp21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
YB [auth r2]Ribosomal_L28ee6sgcr21 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: Ribosomal_L28eECOD (1.6)
ZB [auth s2]Ribosomal_L10e6sgcs21 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
ZB [auth s2]Ribosomal_P0_L10ee6sgcs22 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: Ribosomal_P0_L10eECOD (1.6)
AC [auth t2]Ribosomal_L11e6sgct21 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
AC [auth t2]Ribosomal_L11_Ne6sgct22 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
H [auth H1]Ribosomal_S6ee6sgcH11 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
FC [auth B]Ribosomal_L1_2nd_1e6sgcB1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2nd_1ECOD (1.6)
FC [auth B]Ribosomal_L1_1st_1e6sgcB2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1st_1ECOD (1.6)
I [auth I1]Ribosomal_S7e_Ne6sgcI12 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
I [auth I1]Ribosomal_S7e_C_1e6sgcI11 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth J1]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
K [auth K1]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
K [auth K1]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
L [auth L1]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
M [auth M1]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
M [auth M1]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
N [auth N1]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
O [auth O1]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
O [auth O1]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
Q [auth Q1]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
R [auth R1]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
T [auth T1]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
U [auth U1]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
V [auth V1]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
X [auth X1]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
C [auth C1]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
JA [auth A2]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
JA [auth A2]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
JA [auth A2]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
LA [auth C2]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
MA [auth D2]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
D [auth D1]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
NA [auth E2]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
NA [auth E2]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
OA [auth F2]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
OA [auth F2]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
QA [auth H2]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
QA [auth H2]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
RA [auth I2]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
RA [auth I2]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
SA [auth J2]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
SA [auth J2]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
SA [auth J2]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
TA [auth L2]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
UA [auth M2]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
VA [auth N2]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
VA [auth N2]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
WA [auth O2]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
E [auth E1]PF07650KH domain (KH_2)KH domain- Domain
E [auth E1]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
E [auth E1]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
XA [auth P2]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
XA [auth P2]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
ZA [auth R2]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
BB [auth T2]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
BB [auth T2]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
DB [auth V2]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
EB [auth W2]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
FB [auth X2]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
GB [auth Y2]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
GB [auth Y2]PF00467KOW motif (KOW)KOW motif- Family
F [auth F1]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
F [auth F1]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
F [auth F1]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
F [auth F1]PF00467KOW motif (KOW)KOW motif- Family
HB [auth Z2]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
HB [auth Z2]PF00467KOW motif (KOW)KOW motif- Family
G [auth G1]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
G [auth G1]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
H [auth H1]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
H [auth H1]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
FC [auth B]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth A1]18S ribosomal RNA---
J [auth J1]40S ribosomal protein S8
K [auth K1]Ribosomal protein S9 (Predicted)
L [auth L1]S10_plectin domain-ontaining protein -
M [auth M1]Ribosomal protein S11
N [auth N1]40S ribosomal protein S12
O [auth O1]Ribosomal_S13_N domain-containing protein
P [auth P1]uS11---
Q [auth Q1]uS19
R [auth R1]Ribosomal protein S16
S [auth S1]eS17
B [auth B1]uS2---
T [auth T1]eS13
U [auth U1]eS19
V [auth V1]Ribosomal_S10 domain-containing protein
W [auth W1]eS21---
X [auth X1]Ribosomal protein S15a
Y [auth Y1]uS12---
Z [auth Z1]eS24---
AA [auth a1]eS25
BA [auth b1]eS26---
CA [auth c1]40S ribosomal protein S27
C [auth C1]40S ribosomal protein S3a
DA [auth d1]Ribosomal protein S28
EA [auth e1]uS14
FA [auth f1]40S ribosomal protein S30
GA [auth g1]Ribosomal protein S27a
HA [auth h1]WD_REPEATS_REGION domain-containing protein
IA [auth i1]polyA mRNA---
JA [auth A2]Ribosomal protein L8
KA [auth B2]uL3
LA [auth C2]uL4---
MA [auth D2]60S ribosomal protein L5
D [auth D1]uS5---
NA [auth E2]60S ribosomal protein L6
OA [auth F2]uL30
PA [auth G2]eL8---
QA [auth H2]uL6
RA [auth I2]60S ribosomal protein L10
SA [auth J2]Ribosomal protein L11
TA [auth L2]eL13---
UA [auth M2]Ribosomal protein L14
VA [auth N2]Ribosomal protein L15
WA [auth O2]uL13---
E [auth E1]uS5
XA [auth P2]uL22
YA [auth Q2]eL18---
ZA [auth R2]eL19---
AB [auth S2]eL20---
BB [auth T2]eL21
CB [auth U2]eL22---
DB [auth V2]Ribosomal protein L23
EB [auth W2]TRASH domain-containing protein
FB [auth X2]Ribosomal_L23eN domain-containing protein
GB [auth Y2]Ribosomal protein L26
F [auth F1]40S ribosomal protein S4
HB [auth Z2]60S ribosomal protein L27
IB [auth a2]Ribosomal_L18e/L15P domain-containing protein
JB [auth b2]eL29---
KB [auth c2]Ribosomal_L7Ae domain-containing protein
LB [auth d2]eL31
MB [auth e2]eL32
NB [auth f2]eL33
OB [auth g2]eL34
PB [auth h2]uL29
QB [auth i2]60S ribosomal protein L36
G [auth G1]Ribosomal protein S5
RB [auth j2]Ribosomal protein L37
SB [auth k2]eL38
TB [auth l2]eL39
UB [auth m2]eL40---
VB [auth n2]60s ribosomal protein l41
WB [auth o2]eL42
XB [auth p2]eL43
YB [auth r2]Ribosomal_L28e domain-containing protein
ZB [auth s2]uL10---
AC [auth t2]Ribosomal protein L12
H [auth H1]40S ribosomal protein S6
BC [auth 54]28S ribosomal RNA---
CC [auth 74]5S ribosomal RNA---
DC [auth 84]5.8S ribosomal RNA---
EC [auth XX]poly-lysine nascent chain---
FC [auth B]Ribosomal protein
GC [auth 23],
HC [auth 33]
tRNA (Lys3)---
I [auth I1]40S ribosomal protein S7

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth J1]IPR001047Small ribosomal subunit protein eS8Family
J [auth J1]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
J [auth J1]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
J [auth J1]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
K [auth K1]IPR002942RNA-binding S4 domainDomain
K [auth K1]IPR022801Small ribosomal subunit protein uS4Family
K [auth K1]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
K [auth K1]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
K [auth K1]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
K [auth K1]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
L [auth L1]IPR037447Small ribosomal subunit protein eS10Family
L [auth L1]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
L [auth L1]IPR005326Plectin/eS10, N-terminalDomain
M [auth M1]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
M [auth M1]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth M1]IPR000266Small ribosomal subunit protein uS17Family
M [auth M1]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
M [auth M1]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
N [auth N1]IPR000530Small ribosomal subunit protein eS12Family
N [auth N1]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
N [auth N1]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
N [auth N1]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
O [auth O1]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
O [auth O1]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth O1]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
O [auth O1]IPR000589Small ribosomal subunit protein uS15Family
Q [auth Q1]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
Q [auth Q1]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Q [auth Q1]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
Q [auth Q1]IPR002222Small ribosomal subunit protein uS19Family
R [auth R1]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
R [auth R1]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
R [auth R1]IPR000754Small ribosomal subunit protein uS9Family
R [auth R1]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
S [auth S1]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
S [auth S1]IPR001210Small ribosomal subunit protein eS17Family
S [auth S1]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
T [auth T1]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
T [auth T1]IPR001892Small ribosomal subunit protein uS13Family
T [auth T1]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
T [auth T1]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
U [auth U1]IPR001266Small ribosomal subunit protein eS19Family
U [auth U1]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
U [auth U1]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
U [auth U1]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
V [auth V1]IPR001848Small ribosomal subunit protein uS10Family
V [auth V1]IPR027486Small ribosomal subunit protein uS10 domainDomain
V [auth V1]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
V [auth V1]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
V [auth V1]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
X [auth X1]IPR000630Small ribosomal subunit protein uS8Family
X [auth X1]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
X [auth X1]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
AA [auth a1]IPR004977Small ribosomal subunit protein eS25Family
AA [auth a1]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
CA [auth c1]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
CA [auth c1]IPR000592Small ribosomal subunit protein eS27Family
CA [auth c1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
C [auth C1]IPR001593Small ribosomal subunit protein eS1Family
C [auth C1]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
C [auth C1]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
DA [auth d1]IPR028626Ribosomal protein eS28 conserved siteConserved Site
DA [auth d1]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
DA [auth d1]IPR000289Small ribosomal subunit protein eS28Family
EA [auth e1]IPR001209Small ribosomal subunit protein uS14Family
EA [auth e1]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
EA [auth e1]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
EA [auth e1]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
FA [auth f1]IPR039415Ubiquitin-like protein FUBIDomain
FA [auth f1]IPR019956Ubiquitin domainDomain
FA [auth f1]IPR019954Ubiquitin conserved siteConserved Site
FA [auth f1]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
FA [auth f1]IPR000626Ubiquitin-like domainDomain
FA [auth f1]IPR006846Small ribosomal subunit protein eS30Family
GA [auth g1]IPR019954Ubiquitin conserved siteConserved Site
GA [auth g1]IPR000626Ubiquitin-like domainDomain
GA [auth g1]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
GA [auth g1]IPR002906Small ribosomal subunit protein eS31Domain
GA [auth g1]IPR019956Ubiquitin domainDomain
GA [auth g1]IPR050158Ubiquitin and ubiquitin-likeFamily
GA [auth g1]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
GA [auth g1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth h1]IPR019775WD40 repeat, conserved siteConserved Site
HA [auth h1]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth h1]IPR045223Small ribosomal subunit protein RACK1-likeFamily
HA [auth h1]IPR001680WD40 repeatRepeat
HA [auth h1]IPR020472G-protein beta WD-40 repeatRepeat
HA [auth h1]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
JA [auth A2]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
JA [auth A2]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
JA [auth A2]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
JA [auth A2]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
JA [auth A2]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
JA [auth A2]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
JA [auth A2]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
JA [auth A2]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
JA [auth A2]IPR002171Large ribosomal subunit protein uL2Family
KA [auth B2]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
KA [auth B2]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
KA [auth B2]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
KA [auth B2]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
KA [auth B2]IPR000597Large ribosomal subunit protein uL3Family
MA [auth D2]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
MA [auth D2]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
NA [auth E2]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
NA [auth E2]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
NA [auth E2]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
NA [auth E2]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
NA [auth E2]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth E2]IPR000915Large ribosomal subunit protein eL6Family
OA [auth F2]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
OA [auth F2]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
OA [auth F2]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
OA [auth F2]IPR039699Large ribosomal subunit protein uL30Family
OA [auth F2]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
OA [auth F2]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
QA [auth H2]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
QA [auth H2]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
QA [auth H2]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
QA [auth H2]IPR000702Large ribosomal subunit protein uL6-likeFamily
RA [auth I2]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
RA [auth I2]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
RA [auth I2]IPR016180Large ribosomal subunit protein uL16 domainDomain
RA [auth I2]IPR047873Large ribosomal subunit protein uL16Family
RA [auth I2]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
SA [auth J2]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
SA [auth J2]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
SA [auth J2]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
SA [auth J2]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
SA [auth J2]IPR002132Large ribosomal subunit protein uL5Family
UA [auth M2]IPR039660Large ribosomal subunit protein eL14Family
UA [auth M2]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
UA [auth M2]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
UA [auth M2]IPR002784Large ribosomal subunit protein eL14 domainDomain
UA [auth M2]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
VA [auth N2]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
VA [auth N2]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
VA [auth N2]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
VA [auth N2]IPR000439Large ribosomal subunit protein eL15Family
E [auth E1]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
E [auth E1]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
E [auth E1]IPR004044K Homology domain, type 2Domain
E [auth E1]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
E [auth E1]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
E [auth E1]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
E [auth E1]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
XA [auth P2]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
XA [auth P2]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
XA [auth P2]IPR001063Large ribosomal subunit protein uL22Family
XA [auth P2]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
BB [auth T2]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
BB [auth T2]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
BB [auth T2]IPR001147Large ribosomal subunit protein eL21Family
BB [auth T2]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
DB [auth V2]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
DB [auth V2]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
DB [auth V2]IPR000218Large ribosomal subunit protein uL14Family
EB [auth W2]IPR011017TRASH domainDomain
EB [auth W2]IPR000988Large ribosomal subunit protein eL24-relatedFamily
EB [auth W2]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
EB [auth W2]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
FB [auth X2]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
FB [auth X2]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
FB [auth X2]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
FB [auth X2]IPR019985Large ribosomal subunit protein uL23Family
FB [auth X2]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
FB [auth X2]IPR013025Large ribosomal subunit protein uL23-likeFamily
GB [auth Y2]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
GB [auth Y2]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GB [auth Y2]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
GB [auth Y2]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
GB [auth Y2]IPR005824KOWDomain
GB [auth Y2]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
F [auth F1]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
F [auth F1]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
F [auth F1]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
F [auth F1]IPR002942RNA-binding S4 domainDomain
F [auth F1]IPR013845Small ribosomal subunit protein eS4, central regionDomain
F [auth F1]IPR000876Small ribosomal subunit protein eS4Family
F [auth F1]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth F1]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
F [auth F1]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
F [auth F1]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
F [auth F1]IPR005824KOWDomain
HB [auth Z2]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
HB [auth Z2]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HB [auth Z2]IPR001141Large ribosomal subunit protein eL27Family
HB [auth Z2]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
HB [auth Z2]IPR005824KOWDomain
HB [auth Z2]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
IB [auth a2]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
IB [auth a2]IPR021131Large ribosomal subunit protein uL15/eL18Domain
IB [auth a2]IPR030878Large ribosomal subunit protein uL15Family
IB [auth a2]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
IB [auth a2]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
KB [auth c2]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
KB [auth c2]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
KB [auth c2]IPR000231Large ribosomal subunit protein eL30Family
KB [auth c2]IPR039109Large ribosomal subunit protein eL30-likeFamily
KB [auth c2]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
LB [auth d2]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
LB [auth d2]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
LB [auth d2]IPR000054Large ribosomal subunit protein eL31Family
MB [auth e2]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
MB [auth e2]IPR001515Large ribosomal subunit protein eL32Family
MB [auth e2]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
NB [auth f2]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
NB [auth f2]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
NB [auth f2]IPR001780Large ribosomal subunit protein eL33Family
NB [auth f2]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
OB [auth g2]IPR008195Large ribosomal subunit protein eL34Family
OB [auth g2]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
PB [auth h2]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
PB [auth h2]IPR001854Large ribosomal subunit protein uL29Family
PB [auth h2]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
PB [auth h2]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
QB [auth i2]IPR000509Large ribosomal subunit protein eL36Family
QB [auth i2]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
G [auth G1]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth G1]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth G1]IPR000235Small ribosomal subunit protein uS7Family
G [auth G1]IPR023798Small ribosomal subunit protein uS7 domainDomain
G [auth G1]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
RB [auth j2]IPR001569Large ribosomal subunit protein eL37Family
RB [auth j2]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
RB [auth j2]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RB [auth j2]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
SB [auth k2]IPR002675Large ribosomal subunit protein eL38Family
SB [auth k2]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
TB [auth l2]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
TB [auth l2]IPR000077Large ribosomal subunit protein eL39Family
TB [auth l2]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
VB [auth n2]IPR007836Large ribosomal subunit protein eS32Family
WB [auth o2]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
WB [auth o2]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WB [auth o2]IPR000552Large ribosomal subunit protein eL42Family
XB [auth p2]IPR002674Large ribosomal subunit protein eL43Family
XB [auth p2]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
XB [auth p2]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
YB [auth r2]IPR029004Ribosomal eL28/Mak16Domain
YB [auth r2]IPR002672Large ribosomal subunit protein eL28Family
AC [auth t2]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
AC [auth t2]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
AC [auth t2]IPR000911Ribosomal protein uL11Family
AC [auth t2]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
AC [auth t2]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
AC [auth t2]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
H [auth H1]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth H1]IPR001377Small ribosomal subunit protein eS6Family
H [auth H1]IPR014401Small ribosomal subunit protein eS6-likeFamily
FC [auth B]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
FC [auth B]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
FC [auth B]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
FC [auth B]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
FC [auth B]IPR002143Large ribosomal subunit protein uL1Family
FC [auth B]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
I [auth I1]IPR000554Small ribosomal subunit protein eS7Family
I [auth I1]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site