6RAX
D. melanogaster CMG-DNA, State 1B
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 2] | MCM_OB | e6rax23 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MCM_OB | ECOD (1.6) |
A [auth 2] | MCM_C | e6rax21 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: MCM_C | ECOD (1.6) |
A [auth 2] | MCM_N | e6rax24 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: MCM_N | ECOD (1.6) |
A [auth 2] | MCM_AAA | e6rax22 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
A [auth 2] | MCM_OB_4 | e6rax25 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: MCM_OB_4 | ECOD (1.6) |
J [auth H] | Sld5_1 | e6raxH1 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF1 N-terminal domain-like | F: Sld5_1 | ECOD (1.6) |
J [auth H] | SLD5_C_2 | e6raxH2 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: SLD5_C_2 | ECOD (1.6) |
K [auth L] | Sld5 | e6raxL1 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF2 C-terminal domain-like | F: Sld5 | ECOD (1.6) |
K [auth L] | KOG4071 | e6raxL2 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: KOG4071 | ECOD (1.6) |
L [auth M] | Sld5 | e6raxM2 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF2 C-terminal domain-like | F: Sld5 | ECOD (1.6) |
L [auth M] | COG5138 | e6raxM1 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: COG5138 | ECOD (1.6) |
M [auth N] | Sld5_2 | e6raxN2 | A: alpha bundles | X: GINS helical bundle-like (From Homology) | H: GINS helical bundle-like | T: PSF1 N-terminal domain-like | F: Sld5_2 | ECOD (1.6) |
M [auth N] | SLD5_C | e6raxN1 | A: a+b two layers | X: L9 N-domain-like | H: GINS/PriA/YqbF domain (From Topology) | T: GINS/PriA/YqbF domain | F: SLD5_C | ECOD (1.6) |
C [auth 4] | MCM_OB | e6rax41 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MCM_OB | ECOD (1.6) |
C [auth 4] | MCM_C | e6rax43 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: MCM_C | ECOD (1.6) |
C [auth 4] | MCM_N | e6rax44 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: MCM_N | ECOD (1.6) |
C [auth 4] | MCM_AAA | e6rax42 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
C [auth 4] | MCM_OB_1 | e6rax45 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: MCM_OB_1 | ECOD (1.6) |
D [auth 5] | MCM_OB | e6rax52 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MCM_OB | ECOD (1.6) |
D [auth 5] | MCM_C | e6rax55 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: MCM_C | ECOD (1.6) |
D [auth 5] | MCM_N | e6rax53 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: MCM_N | ECOD (1.6) |
D [auth 5] | MCM_AAA | e6rax54 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
D [auth 5] | F_UNCLASSIFIED | e6rax51 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth 6] | MCM_OB | e6rax65 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MCM_OB | ECOD (1.6) |
E [auth 6] | MCM_C | e6rax62 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: MCM_C | ECOD (1.6) |
E [auth 6] | MCM_N | e6rax63 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: MCM_N | ECOD (1.6) |
E [auth 6] | MCM_AAA | e6rax64 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
E [auth 6] | MCM_OB_2 | e6rax61 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: MCM_OB_2 | ECOD (1.6) |
F [auth 7] | MCM_OB | e6rax71 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: MCM_OB | ECOD (1.6) |
F [auth 7] | MCM_C | e6rax75 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: MCM_C | ECOD (1.6) |
F [auth 7] | MCM_N_1 | e6rax73 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: MCM_N_1 | ECOD (1.6) |
F [auth 7] | MCM_AAA | e6rax72 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MCM_AAA | ECOD (1.6) |
F [auth 7] | KOG0482 | e6rax74 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: KOG0482 | ECOD (1.6) |
I [auth A] | CDC45_2nd | e6raxA2 | A: alpha arrays | X: HhH/H2TH | H: Cdc45 CID domain (From Topology) | T: Cdc45 CID domain | F: CDC45_2nd | ECOD (1.6) |
I [auth A] | CDC45_3rd | e6raxA3 | A: a+b three layers | X: C-terminal domain in DHH phosphoesterases (From Topology) | H: C-terminal domain in DHH phosphoesterases (From Topology) | T: C-terminal domain in DHH phosphoesterases | F: CDC45_3rd | ECOD (1.6) |
I [auth A] | CDC45_1st | e6raxA1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: DHH phosphoesterases | F: CDC45_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
K [auth L] | 3.40.5.50 | Alpha Beta | 3-Layer(aba) Sandwich | Ribosomal Protein L9 | domain 1 | CATH (utative) |
M [auth N] | 1.20.58.1030 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (utative) |
M [auth N] | 3.40.5.60 | Alpha Beta | 3-Layer(aba) Sandwich | Ribosomal Protein L9 | domain 1 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 2] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
A [auth 2] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
A [auth 2] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
A [auth 2] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
J [auth H] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |
K [auth L] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |
L [auth M] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |
L [auth M] | PF22466 | GINS/PriA/YqbF domain (GINS_N) | GINS/PriA/YqbF domain | This entry represents the GINS/PriA/YqbF domain, which is found in the N-terminal region of the GINS complex protein. The GINS complex is crucial for the establishment of DNA replication forks and replisome progression in eukaryotes. The crystal stru ... | Domain |
M [auth N] | PF05916 | GINS complex protein helical bundle domain (Sld5) | GINS complex protein helical bundle domain | This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ... | Domain |
M [auth N] | PF16922 | DNA replication complex GINS protein SLD5 C-terminus (SLD5_C) | DNA replication complex GINS protein SLD5 C-terminus | The C-terminal domain of DNA replication complex GINS protein SLD5 is important in the assembly of the GINS complex, a complex which is involved in initiation of DNA replication and progression of DNA replication forks [1]. | Domain |
B [auth 3] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
B [auth 3] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
B [auth 3] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
B [auth 3] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
C [auth 4] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
C [auth 4] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
C [auth 4] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
C [auth 4] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
D [auth 5] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
D [auth 5] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
D [auth 5] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
D [auth 5] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
E [auth 6] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
E [auth 6] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
E [auth 6] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
E [auth 6] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
F [auth 7] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
F [auth 7] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
F [auth 7] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
F [auth 7] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
I [auth A] | PF02724 | CDC45-like protein (CDC45) | CDC45-like protein | - | Family |