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 6RAP | pdb_00006rap

Cryo-EM structure of the anti-feeding prophage cap (AFP tube terminating cap)

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DPeptidase_M78e6rapD1 A: alpha arraysX: PriB N-terminal domain-likeH: Rubredoxin-relatedT: Aconitase iron-sulfur domainF: Peptidase_M78ECOD (v295.2)
CPeptidase_M78e6rapC1 A: alpha arraysX: PriB N-terminal domain-likeH: Rubredoxin-relatedT: Aconitase iron-sulfur domainF: Peptidase_M78ECOD (v295.2)
B [auth A]Peptidase_M78e6rapA1 A: alpha arraysX: PriB N-terminal domain-likeH: Rubredoxin-relatedT: Aconitase iron-sulfur domainF: Peptidase_M78ECOD (v295.2)
A [auth B]Peptidase_M78e6rapB1 A: alpha arraysX: PriB N-terminal domain-likeH: Rubredoxin-relatedT: Aconitase iron-sulfur domainF: Peptidase_M78ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Afp16- - -
Afp3- - -
Afp2- - -
A [auth B],
B [auth A]		Afp1 - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR025351Pvc16, N-terminalDomain
IPR052042Tail sheath structural proteinFamily
IPR020287Tail sheath protein, C-terminal domainDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain
IPR052042Tail sheath structural proteinFamily
IPR020287Tail sheath protein, C-terminal domainDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain
A [auth B],
B [auth A]		IPR011747Conserved hypothetical protein CHP02241Family
A [auth B],
B [auth A]		IPR010667Bacteriophage T4, Gp19, tail tubeFamily