6R9Q
Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AACCAA RNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UCH | e6r9qA1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: UCH | ECOD (1.6) |
A | RNase_T | e6r9qA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: RNase_T | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.70.10 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00929 | Exonuclease (RNase_T) | Exonuclease | - | Family | |
PF13423 | Ubiquitin carboxyl-terminal hydrolase (UCH_1) | Ubiquitin carboxyl-terminal hydrolase | This is the ubiquitin carboxyl-terminal hydrolase domain found in a variety of proteins, including PAN2, one of the subunits of the poly(A)-specific nuclease (PAN) is a deadenylating enzyme involved in cytoplasmic mRNA turnover (consisting of PAN2 an ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR028889 | Ubiquitin specific protease domain | Domain | |
IPR030843 | PAN2-PAN3 deadenylation complex catalytic subunit PAN2 | Family | |
IPR028881 | PAN2, UCH domain | Domain | |
IPR048841 | PAN2-PAN3 deadenylation complex catalytic subunit PAN2, N-terminal | Domain | |
IPR011047 | Quinoprotein alcohol dehydrogenase-like superfamily | Homologous Superfamily | |
IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
IPR050785 | PAN2-PAN3 complex catalytic subunit | Family | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR013520 | Exonuclease, RNase T/DNA polymerase III | Domain |