Annotations: 6R1B

Crystal structure of UgpB from Mycobacterium tuberculosis in complex with glycerophosphocholine

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Metallophos	e6r1bD1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.2)
C	Metallophos	e6r1bC1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.2)
B	Proteasome	e6r1bB1	A: beta barrels	X: Ribosomal protein S5 domain 2-like	H: Ntn	T: Proteasome subunits	F: Proteasome	ECOD (v294.2)
A	Metallophos	e6r1bA1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (utative)
C	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (utative)
B	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (utative)
A	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family
C	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family
B	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family
A	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB	cation binding ion binding binding metal ion binding small molecule binding transporter activity transmembrane transporter activity	-	cell periphery cellular anatomical structure plasma membrane membrane
C	Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB	cation binding ion binding binding metal ion binding small molecule binding transporter activity transmembrane transporter activity	-	cell periphery cellular anatomical structure plasma membrane membrane
B	Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB	cation binding ion binding binding metal ion binding small molecule binding transporter activity transmembrane transporter activity	-	cell periphery cellular anatomical structure plasma membrane membrane
A	Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB	cation binding ion binding binding metal ion binding small molecule binding transporter activity transmembrane transporter activity	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D	IPR050490	Bacterial solute-binding protein 1	Family
D	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
D	IPR006059	Bacterial-type extracellular solute-binding protein	Family
C	IPR050490	Bacterial solute-binding protein 1	Family
C	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
C	IPR006059	Bacterial-type extracellular solute-binding protein	Family
B	IPR050490	Bacterial solute-binding protein 1	Family
B	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
B	IPR006059	Bacterial-type extracellular solute-binding protein	Family
A	IPR050490	Bacterial solute-binding protein 1	Family
A	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
A	IPR006059	Bacterial-type extracellular solute-binding protein	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
D	MLZ	Parent Component: LYS : AA0076 : N6-methyl-L-lysine MOD:00085
C	MLZ	Parent Component: LYS : AA0076 , AA0076 : N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085
B	MLZ	Parent Component: LYS : AA0076 , AA0076 , AA0076 : N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085
A	MLZ	Parent Component: LYS : AA0076 , AA0076 , AA0076 , AA0076 : N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085

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