6QWT
Sicinivirus 3Dpol RNA dependent RNA polymerase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6qwta_ | Multi-domain proteins (alpha and beta) | DNA/RNA polymerases | DNA/RNA polymerases | automated matches | automated matches | (Chicken sicinivirus JSY ) [TaxId: 1746030 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RdRP_1_C | e6qwtA2 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: RdRP_1_C | ECOD (1.6) |
A | RdRP_1_N | e6qwtA1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_1_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.270 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Reverse transcriptase/Diguanylate cyclase domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00680 | Viral RNA-dependent RNA polymerase (RdRP_1) | Viral RNA-dependent RNA polymerase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001205 | RNA-directed RNA polymerase, C-terminal domain | Domain | |
IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
IPR001676 | Picornavirus capsid | Domain | |
IPR014759 | Helicase, superfamily 3, single-stranded RNA virus | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR009003 | Peptidase S1, PA clan | Homologous Superfamily | |
IPR004004 | Helicase/polymerase/peptidase polyprotein, Calicivirus-type | Family | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR044067 | Picornavirales 3C/3C-like protease domain | Domain | |
IPR033703 | Picornavirus/Calicivirus coat protein | Domain | |
IPR043504 | Peptidase S1, PA clan, chymotrypsin-like fold | Homologous Superfamily | |
IPR007094 | RNA-directed RNA polymerase, catalytic domain | Domain | |
IPR000605 | Helicase, superfamily 3, single-stranded DNA/RNA virus | Domain |