Annotations: 6QM3

Crystal structure of a calcium- and sodium-bound mouse Olfactomedin-1 disulfide-linked dimer of the Olfactomedin domain and part of coiled coil

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6qm3b_	All beta proteins	5-bladed beta-propeller	Olfactomedin (OLF)-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d6qm3a1	All beta proteins	5-bladed beta-propeller	Olfactomedin (OLF)-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d6qm3a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Olfactomedin-like	8052993	3002154	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Olfactomedin-like	8052993	3002154	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Metallophos	e6qm3B1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.2)
A	MAM33	e6qm3A1	A: beta barrels	X: HAD domain-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: MAM33	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02191	Olfactomedin-like domain (OLF)	Olfactomedin-like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Noelin	amyloid-beta binding binding peptide binding identical protein binding protein binding	regulation of biological process amyloid precursor protein catabolic process regulation of cellular process regulation of amyloid-beta formation regulation of protein metabolic process biological regulation regulation of amyloid precursor protein catabolic process primary metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process amyloid-beta metabolic process metabolic process cellular process protein metabolic process regulation of biological process amyloid precursor protein catabolic process regulation of cellular process regulation of amyloid-beta formation regulation of protein metabolic process biological regulation regulation of amyloid precursor protein catabolic process primary metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process amyloid-beta metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process amyloid precursor protein metabolic process regulation of metabolic process amyloid-beta formation regulation of epithelial to mesenchymal transition multicellular organismal process regulation of developmental process cellular developmental process positive regulation of biological process positive regulation of epithelial to mesenchymal transition regulation of cell differentiation mesenchyme development positive regulation of developmental process positive regulation of cell differentiation cell differentiation anatomical structure development regulation of multicellular organismal process positive regulation of cellular process developmental process animal organ development tissue development epithelial to mesenchymal transition positive regulation of multicellular organismal process mesenchymal cell differentiation regulation of biosynthetic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process positive regulation of macromolecule metabolic process positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death cellular response to stimulus response to stimulus signaling signal transduction cell communication axon extension regulation of growth axonogenesis regulation of cellular component size developmental growth cell projection organization neuron projection development multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis regulation of biological quality system development nervous system development developmental growth involved in morphogenesis generation of neurons regulation of cellular component organization plasma membrane bounded cell projection morphogenesis cell development cell growth cell morphogenesis regulation of axon extension cellular component organization neurogenesis regulation of extent of cell growth cellular component organization or biogenesis regulation of cell size neuron projection extension regulation of developmental growth plasma membrane bounded cell projection organization developmental cell growth growth axon development regulation of cell growth cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis neuron development regulation of anatomical structure size regulation of localization cellular localization protein localization to synapse regulation of protein localization regulation of neurotransmitter receptor localization to postsynaptic specialization membrane regulation of protein localization to synapse neurotransmitter receptor localization to postsynaptic specialization membrane localization intracellular protein localization regulation of protein localization to membrane regulation of receptor localization to synapse protein localization to postsynaptic specialization membrane protein localization to cell periphery protein localization to postsynaptic membrane regulation of protein localization to cell periphery localization within membrane protein localization to membrane protein-containing complex localization regulation of postsynaptic membrane neurotransmitter receptor levels regulation of cellular localization macromolecule localization protein localization to organelle protein localization to postsynapse protein localization to cell junction receptor localization to synapse negative regulation of biological process negative regulation of amyloid precursor protein catabolic process negative regulation of cellular process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of amyloid-beta formation negative regulation of metabolic process heart development heart morphogenesis circulatory system development cardiac epithelial to mesenchymal transition animal organ morphogenesis atrioventricular valve development heart valve development atrioventricular valve formation heart valve morphogenesis anatomical structure formation involved in morphogenesis heart valve formation atrioventricular valve morphogenesis negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process neuronal signal transduction	extrinsic component of plasma membrane postsynaptic specialization membrane synapse extrinsic component of postsynaptic density membrane postsynaptic density membrane cell periphery cellular anatomical structure cell junction extrinsic component of postsynaptic specialization membrane asymmetric synapse postsynaptic specialization membrane plasma membrane synaptic membrane extrinsic component of plasma membrane postsynaptic specialization membrane synapse extrinsic component of postsynaptic density membrane postsynaptic density membrane cell periphery cellular anatomical structure cell junction extrinsic component of postsynaptic specialization membrane asymmetric synapse postsynaptic specialization membrane plasma membrane synaptic membrane extrinsic component of synaptic membrane postsynapse postsynaptic density neuron to neuron synapse organelle postsynaptic membrane plasma membrane region extrinsic component of membrane extrinsic component of postsynaptic membrane somatodendritic compartment cell body perikaryon neuronal cell body growth cone axon cell projection distal axon neuron projection axonal growth cone plasma membrane bounded cell projection site of polarized growth protein-containing complex plasma membrane protein complex membrane protein complex transporter complex AMPA glutamate receptor complex ionotropic glutamate receptor complex neurotransmitter receptor complex transmembrane transporter complex plasma membrane signaling receptor complex signaling receptor complex monoatomic ion channel complex glutamatergic synapse membrane-bounded organelle intracellular organelle intracellular anatomical structure endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR050605	Olfactomedin-like domain-containing protein	Family
A, B	IPR022082	Noelin domain	Domain
A, B	IPR003112	Olfactomedin-like domain	Domain
A, B	IPR011044	Quinoprotein amine dehydrogenase, beta chain-like	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.