Molecular scaffolds expand the nanobody toolkit for cryo-EM applications: crystal structure of Mb-cHopQ-Nb207


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
JMG4e6qd6J1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F: MG4ECOD (v295.2)
Ie6qd6I1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
He6qd6H1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
Ge6qd6G1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
Fe6qd6F1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
Ee6qd6E1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
De6qd6D1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
Ce6qd6C1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
Be6qd6B1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
Ae6qd6A1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
A, B, C, D, E
Heavy ChainIGHV1 --SAbDab (2026-08-21)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF18304SabA N-terminal extracellular adhesion domain (SabA_adhesion)SabA N-terminal extracellular adhesion domainThis is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino ...This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR040838SabA, N-terminal extracellular adhesion domainDomain
A, B, C, D, E
IPR002718Outer membrane protein, HelicobacterFamily