6QD0
MloK1 model from single particle analysis of 2D crystals, class 4 (compact/open conformation)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | cAMP-binding domain-like | 8043187 | 3000084 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | cAMP-binding domain-like | 8043187 | 3000084 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | cAMP-binding domain-like | 8043187 | 3000084 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | cAMP-binding domain-like | 8043187 | 3000084 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | cNMP_binding_1 | e6qd0A2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
A | Ion_trans_2 | e6qd0A1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans_2 | ECOD (1.6) |
C | cNMP_binding_1 | e6qd0C1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
C | Ion_trans_2 | e6qd0C2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans_2 | ECOD (1.6) |
D | cNMP_binding_1 | e6qd0D1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
D | Ion_trans_2 | e6qd0D2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans_2 | ECOD (1.6) |
B | cNMP_binding_1 | e6qd0B2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
B | Ion_trans_2 | e6qd0B1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans_2 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07885 | Ion channel (Ion_trans_2) | Ion channel | - | Family | |
PF00520 | Ion transport protein (Ion_trans) | Ion transport protein | - | Family | |
PF00027 | Cyclic nucleotide-binding domain (cNMP_binding) | Cyclic nucleotide-binding domain | This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005821 | Ion transport domain | Domain | |
IPR018488 | Cyclic nucleotide-binding, conserved site | Conserved Site | |
IPR000595 | Cyclic nucleotide-binding domain | Domain | |
IPR050866 | Cyclic nucleotide-gated cation channel | Family | |
IPR018490 | Cyclic nucleotide-binding domain superfamily | Homologous Superfamily | |
IPR027378 | Cyclic nucleotide-regulated ion channel, N-terminal | Homologous Superfamily | |
IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily |