6Q2R
Cryo-EM structure of RET/GFRa2/NRTN extracellular complex in the tetrameric form
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cystine-knot cytokines | 8084510 | 3000846 | SCOP2B (2022-06-29) |
G [auth U] | SCOP2B Superfamily | Cystine-knot cytokines | 8084510 | 3000846 | SCOP2B (2022-06-29) |
H [auth V] | SCOP2B Superfamily | Cystine-knot cytokines | 8084510 | 3000846 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cystine-knot cytokines | 8084510 | 3000846 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TGF_beta | e6q2rA1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
G [auth U] | TGF_beta | e6q2rU1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
H [auth V] | TGF_beta | e6q2rV1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
B | TGF_beta | e6q2rB1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: TGF_beta | ECOD (1.6) |
C | GDNF | e6q2rC2 | A: alpha superhelices | X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like | H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA | T: GDNF receptor | F: GDNF | ECOD (1.6) |
E [auth D] | GDNF | e6q2rD1 | A: alpha superhelices | X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like | H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA | T: GDNF receptor | F: GDNF | ECOD (1.6) |
K [auth X] | GDNF | e6q2rX3 | A: alpha superhelices | X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like | H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA | T: GDNF receptor | F: GDNF | ECOD (1.6) |
I [auth W] | GDNF | e6q2rW3 | A: alpha superhelices | X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like | H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA | T: GDNF receptor | F: GDNF | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, G [auth U], H [auth V] | PF00019 | Transforming growth factor beta like domain (TGF_beta) | Transforming growth factor beta like domain | - | Domain |
C, E [auth D], I [auth W], K [auth X] | PF02351 | GDNF/GAS1 domain (GDNF) | GDNF/GAS1 domain | This cysteine rich domain is found in multiple copies in GNDF and GAS1 proteins. GDNF and neurturin (NTN) receptors are potent survival factors for sympathetic, sensory and central nervous system neurons [2]. GDNF and neurturin promote neuronal surv ... | Domain |
D [auth E], F, J [auth Y], L [auth Z] | PF00028 | Cadherin domain (Cadherin) | Cadherin domain | - | Domain |
D [auth E], F, J [auth Y], L [auth Z] | PF22540 | RET, Cysteine Rich Domain (RET_CRD) | RET, Cysteine Rich Domain | RET is a single transmembrane-spanning receptor tyrosine kinase (RTK) that plays critical roles in the development of vertebrates. Structural analysis indicate that the ligand-binding RET ectodomain (RET-ECD) contains four consecutive cadherin-like d ... | Domain |
D [auth E], F, J [auth Y], L [auth Z] | PF17813 | RET Cadherin like domain 4 (RET_CLD4) | RET Cadherin like domain 4 | RET is a single transmembrane-spanning receptor tyrosine kinase (RTK) that plays critical roles in the development of vertebrates. Structural analysis indicate that the ligand-binding RET ectodomain (RET-ECD) contains four consecutive cadherin-like d ... | Domain |
D [auth E], F, J [auth Y], L [auth Z] | PF17756 | RET Cadherin like domain 1 (RET_CLD1) | RET Cadherin like domain 1 | RET is a single transmembrane-spanning receptor tyrosine kinase (RTK) that plays critical roles in the development of vertebrates. Structural analysis indicate that RET contains four consecutive cadherin-like domains (CLD). This entry relates to the ... | Domain |
D [auth E], F, J [auth Y], L [auth Z] | PF17812 | RET Cadherin like domain 3 (RET_CLD3) | RET Cadherin like domain 3 | RET is a single transmembrane-spanning receptor tyrosine kinase (RTK) that plays critical roles in the development of vertebrates. Structural analysis indicate that RET contains four consecutive cadherin-like domains (CLD). This entry relates to CLD3 ... | Domain |