6PZ8
MERS S0 trimer in complex with variable domain of antibody G2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092156 | 3002562 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092154 | 3000282 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092156 | 3002562 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092154 | 3000282 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092154 | 3000282 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092156 | 3002562 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Coronavirus S1 glycoprotein, domain C-like | 8092665 | 3002615 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8092152 | 3000120 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Coronavirus S1 glycoprotein, domain D-like | 8092667 | 3002616 | SCOP2B (2022-06-29) |
F [auth J] | SCOP2B Superfamily | Coronavirus S1 glycoprotein, domain D-like | 8092667 | 3002616 | SCOP2B (2022-06-29) |
F [auth J] | SCOP2B Superfamily | Coronavirus S1 glycoprotein, domain C-like | 8092665 | 3002615 | SCOP2B (2022-06-29) |
F [auth J] | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8092152 | 3000120 | SCOP2B (2022-06-29) |
J [auth F] | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8092152 | 3000120 | SCOP2B (2022-06-29) |
J [auth F] | SCOP2B Superfamily | Coronavirus S1 glycoprotein, domain D-like | 8092667 | 3002616 | SCOP2B (2022-06-29) |
J [auth F] | SCOP2B Superfamily | Coronavirus S1 glycoprotein, domain C-like | 8092665 | 3002615 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Corona_S2 | e6pz8A1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: Corona_S2 | ECOD (1.6) |
E | Corona_S2 | e6pz8E1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: Corona_S2 | ECOD (1.6) |
I | Corona_S2 | e6pz8I1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: Corona_S2 | ECOD (1.6) |
B | Spike_NTD | e6pz8B1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Spike_NTD | ECOD (1.6) |
B | Corona_S1_3rd | e6pz8B2 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: Corona_S1_3rd | ECOD (1.6) |
F [auth J] | Spike_NTD | e6pz8J2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Spike_NTD | ECOD (1.6) |
F [auth J] | Corona_S1_3rd | e6pz8J1 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: Corona_S1_3rd | ECOD (1.6) |
J [auth F] | Spike_NTD | e6pz8F1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Spike_NTD | ECOD (1.6) |
J [auth F] | Corona_S1_3rd | e6pz8F2 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: Corona_S1_3rd | ECOD (1.6) |
C [auth H] | V-set_8 | e6pz8H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
G [auth C] | V-set_8 | e6pz8C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
K [auth D] | V-set_8 | e6pz8D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D [auth L] | V-set | e6pz8L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
H [auth G] | V-set | e6pz8G1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
L [auth K] | V-set | e6pz8K1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth H], G [auth C], K [auth D] | Fab G2, neutralizing | VH-CH1 | Mus musculus (house mouse) | IGHV1-66*01, IGHJ4*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
D [auth L], H [auth G], L [auth K] | Fab G2, neutralizing | L-KAPPA | Mus musculus (house mouse) | IGKV3-2*01, IGKJ5*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth H], G [auth C], K [auth D] | Heavy Chain | IGHV1 | - | s protein | SAbDab (2024-09-13) |
D [auth L], H [auth G], L [auth K] | Light Chain | IGKV3 | Kappa | s protein | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01601 | Coronavirus spike glycoprotein S2 (CoV_S2) | Coronavirus spike glycoprotein S2 | - | Family | |
B, F [auth J], J [auth F] | PF16451 | Betacoronavirus-like spike glycoprotein S1, N-terminal (bCoV_S1_N) | Betacoronavirus-like spike glycoprotein S1, N-terminal | This entry represents the N-terminal domain of the betacoronavirus-like trimeric spike glycoprotein. The distal S1 subunit of the coronavirus spike protein is responsible for receptor binding. S1 contains two domains; an N-terminal galectin-like doma ... | Domain |
B, F [auth J], J [auth F] | PF19209 | Coronavirus spike glycoprotein S1, C-terminal (CoV_S1_C) | Coronavirus spike glycoprotein S1, C-terminal | This entry represents a domain found at the C-terminus of the Coronavirus S1 protein. It is found across a range of alpha, beta and gamma coronaviruses. This small all beta stranded domain is known as subdomain 2 in the structure of the porcine epide ... | Domain |