6PPH
Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
M [auth A] | PF06112 | e6pphA1 | A: alpha bundles | X: Smallest capsid protein (SCP) (From Topology) | H: Smallest capsid protein (SCP) (From Topology) | T: Smallest capsid protein (SCP) | F: PF06112 | ECOD (1.6) |
N [auth 2] | PF06112 | e6pph21 | A: alpha bundles | X: Smallest capsid protein (SCP) (From Topology) | H: Smallest capsid protein (SCP) (From Topology) | T: Smallest capsid protein (SCP) | F: PF06112 | ECOD (1.6) |
P [auth 3] | PF06112 | e6pph31 | A: alpha bundles | X: Smallest capsid protein (SCP) (From Topology) | H: Smallest capsid protein (SCP) (From Topology) | T: Smallest capsid protein (SCP) | F: PF06112 | ECOD (1.6) |
R [auth 1] | PF06112 | e6pph11 | A: alpha bundles | X: Smallest capsid protein (SCP) (From Topology) | H: Smallest capsid protein (SCP) (From Topology) | T: Smallest capsid protein (SCP) | F: PF06112 | ECOD (1.6) |
T [auth 0] | PF06112 | e6pph01 | A: alpha bundles | X: Smallest capsid protein (SCP) (From Topology) | H: Smallest capsid protein (SCP) (From Topology) | T: Smallest capsid protein (SCP) | F: PF06112 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth k] | PF04559 | Herpesvirus UL17 protein (Herpes_UL17) | Herpesvirus UL17 protein | - | Family |
B [auth l], C [auth m] | PF01499 | Herpesvirus UL25 family (Herpes_UL25) | Herpesvirus UL25 family | - | Family |
F [auth 5], I [auth b] | PF03327 | Herpesvirus capsid shell protein VP19C (Herpes_VP19C) | Herpesvirus capsid shell protein VP19C | - | Family |
G [auth 6], H [auth 7], J [auth c], K [auth d] | PF01802 | Herpesvirus VP23 like capsid protein (Herpes_V23) | Herpesvirus VP23 like capsid protein | - | Family |
L [auth 4], O [auth S], Q [auth T], S [auth X], U [auth W] | PF03122 | Herpes virus major capsid protein (Herpes_MCP) | Herpes virus major capsid protein | - | Family |
M [auth A], N [auth 2], P [auth 3], R [auth 1], T [auth 0] | PF06112 | Gammaherpesvirus capsid protein (Herpes_capsid) | Gammaherpesvirus capsid protein | - | Family |