6PNV
1.42 Angstrom Resolution Crystal Structure of Translocation Protein TolB from Salmonella enterica
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6pnva2 | All beta proteins | 6-bladed beta-propeller | TolB, C-terminal domain | TolB, C-terminal domain | automated matches | (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2-4 ) [TaxId: 1159899 ], | SCOPe (2.08) |
A | d6pnva1 | Alpha and beta proteins (a/b) | Anticodon-binding domain-like | TolB, N-terminal domain | automated matches | automated matches | (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2-4 ) [TaxId: 1159899 ], | SCOPe (2.08) |
A | d6pnva3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2-4 ) [TaxId: 1159899 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DPPIV_N_1 | e6pnvA2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: DPPIV_N_1 | ECOD (1.6) |
A | TolB_N | e6pnvA1 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: TolB_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.10070 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | TolB, N-terminal domain | CATH (utative) |
A | 2.120.10.30 | Mainly Beta | 6 Propeller | Neuraminidase | TolB, C-terminal domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04052 | TolB amino-terminal domain (TolB_N) | TolB amino-terminal domain | TolB is an essential periplasmic component of the tol-dependent translocation system. This function of this amino terminal domain is uncertain. | Domain | |
PF07676 | WD40-like Beta Propeller Repeat (PD40) | WD40-like Beta Propeller Repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Tol-Pal system protein TolB | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011042 | Six-bladed beta-propeller, TolB-like | Homologous Superfamily | |
IPR011659 | WD40-like beta propeller | Repeat | |
IPR007195 | TolB, N-terminal | Domain | |
IPR014167 | Tol-Pal system protein TolB | Family |