Annotations: 6PFV

Structure of S. venezuelae RisG-WhiG-c-di-GMP complex: orthorhombic crystal form

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth G]	V-set	e6pfvG1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: V-set	ECOD (v295.2)
D	V-set	e6pfvD1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: V-set	ECOD (v295.2)
B [auth A]	V-set	e6pfvA1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: V-set	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth T], C [auth B], E	PF22802	RsiG-like (RsiG)	RsiG-like	This entry represents a domain found in homologues of RsiG protein from Streptomyces. This domain adopts an alpha-helix and in Streptomyces self associates to form a dimer. This dimer binds c-di-GMP via two E(X)3-S(X)2-R(X)3-Q(X)-D repeat motifs, one ...	This entry represents a domain found in homologues of RsiG protein from Streptomyces. This domain adopts an alpha-helix and in Streptomyces self associates to form a dimer. This dimer binds c-di-GMP via two E(X)3-S(X)2-R(X)3-Q(X)-D repeat motifs, one on each helix. The complex RsiG-(c-di-GMP) binds to the sporulation-specific sigma factor, WhiG. Some homologues of RsiG contain a second helix and hence two c-di-GMP binding motifs.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth A], D, F [auth G]	RNA polymerase sigma factor	DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups transcription regulator activity DNA-binding transcription factor activity DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups transcription regulator activity DNA-binding transcription factor activity sigma factor activity	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription initiation nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	-
A [auth T], C [auth B], E	AmfC protein	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A], D, F [auth G]	IPR014284	RNA polymerase sigma-70-like domain	Domain
B [auth A], D, F [auth G]	IPR007627	RNA polymerase sigma-70 region 2	Domain
B [auth A], D, F [auth G]	IPR000943	RNA polymerase sigma-70	Domain
B [auth A], D, F [auth G]	IPR007624	RNA polymerase sigma-70 region 3	Domain
B [auth A], D, F [auth G]	IPR012845	RNA polymerase sigma factor, FliA/WhiG	Family
B [auth A], D, F [auth G]	IPR013325	RNA polymerase sigma factor, region 2	Homologous Superfamily
B [auth A], D, F [auth G]	IPR013324	RNA polymerase sigma factor, region 3/4-like	Homologous Superfamily
B [auth A], D, F [auth G]	IPR007630	RNA polymerase sigma-70 region 4	Domain
B [auth A], D, F [auth G]	IPR014284	RNA polymerase sigma-70-like domain	Domain
B [auth A], D, F [auth G]	IPR007627	RNA polymerase sigma-70 region 2	Domain
B [auth A], D, F [auth G]	IPR000943	RNA polymerase sigma-70	Domain
B [auth A], D, F [auth G]	IPR007624	RNA polymerase sigma-70 region 3	Domain
B [auth A], D, F [auth G]	IPR012845	RNA polymerase sigma factor, FliA/WhiG	Family
B [auth A], D, F [auth G]	IPR013325	RNA polymerase sigma factor, region 2	Homologous Superfamily
B [auth A], D, F [auth G]	IPR013324	RNA polymerase sigma factor, region 3/4-like	Homologous Superfamily
B [auth A], D, F [auth G]	IPR007630	RNA polymerase sigma-70 region 4	Domain
B [auth A], D, F [auth G]	IPR014284	RNA polymerase sigma-70-like domain	Domain
B [auth A], D, F [auth G]	IPR007627	RNA polymerase sigma-70 region 2	Domain
B [auth A], D, F [auth G]	IPR000943	RNA polymerase sigma-70	Domain
B [auth A], D, F [auth G]	IPR007624	RNA polymerase sigma-70 region 3	Domain
B [auth A], D, F [auth G]	IPR012845	RNA polymerase sigma factor, FliA/WhiG	Family
B [auth A], D, F [auth G]	IPR013325	RNA polymerase sigma factor, region 2	Homologous Superfamily
B [auth A], D, F [auth G]	IPR013324	RNA polymerase sigma factor, region 3/4-like	Homologous Superfamily
B [auth A], D, F [auth G]	IPR007630	RNA polymerase sigma-70 region 4	Domain
A [auth T], C [auth B], E	IPR049575	Anti-sigma factor RsiG/AmfC-like	Family
A [auth T], C [auth B], E	IPR055209	RsiG-like domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6PFV | pdb_00006pfv

Structure of S. venezuelae RisG-WhiG-c-di-GMP complex: orthorhombic crystal form

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage