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 6PC1 | pdb_00006pc1

Crystal structure of Helicobacter pylori PPX/GppA (E143A) in complex with ppGpp

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DATP-synte6pc1D1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F: ATP-syntECOD (v295.2)
CATP-synte6pc1C1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F: ATP-syntECOD (v295.2)
BATP-synte6pc1B1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F: ATP-syntECOD (v295.2)
AATP-synte6pc1A1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F: ATP-syntECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF02541Ppx/GppA phosphatase family (Ppx-GppA)Ppx/GppA phosphatase family- Family
A, B, C, D
PF21447Ppx/GppA phosphatase, domain III (Ppx-GppA_III)Ppx/GppA phosphatase, domain IIIPpx/GppA phosphatases belong to ASKHA (acetate and sugar kinases, Hsp70, actin) which has an N-terminal (Pfam:PF02541) nucleotide-binding domain (domains I/II), domain III which corresponds to the catalytic phosphohydrolase domain with the common hel ...Ppx/GppA phosphatases belong to ASKHA (acetate and sugar kinases, Hsp70, actin) which has an N-terminal (Pfam:PF02541) nucleotide-binding domain (domains I/II), domain III which corresponds to the catalytic phosphohydrolase domain with the common helical fold and domain IV [1-3]. This entry represents domain III.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Guanosine pentaphosphate phosphohydrolase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR050273GppA/Ppx guanosine pentaphosphate hydrolaseFamily
A, B, C, D
IPR048950Ppx/GppA phosphatase, C-terminalDomain
A, B, C, D
IPR030673Pyrophosphatase, GppA/Ppx-typeFamily
A, B, C, D
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
A, B, C, D
IPR003695Ppx/GppA phosphatase, N-terminalDomain