6P87
E.coli LpxD in complex with compound 5
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Trimeric LpxA-like enzymes | 8091508 | 3001804 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | MurE/MurF N-terminal domain | 8091500 | 3000146 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | MurE/MurF N-terminal domain | 8091500 | 3000146 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Trimeric LpxA-like enzymes | 8091508 | 3001804 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | MurE/MurF N-terminal domain | 8091500 | 3000146 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Trimeric LpxA-like enzymes | 8091508 | 3001804 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00132 | e6p87A2 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: PF00132 | ECOD (1.6) |
A | PF04613 | e6p87A3 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: PF04613 | ECOD (1.6) |
B | PF00132 | e6p87B1 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: PF00132 | ECOD (1.6) |
B | PF04613 | e6p87B2 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: PF04613 | ECOD (1.6) |
C | PF00132 | e6p87C3 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: PF00132 | ECOD (1.6) |
C | PF04613 | e6p87C1 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: PF04613 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase | Chain: A, domain 1 | CATH (utative) |
A | 2.160.10.10 | Mainly Beta | 3 Solenoid | UDP N-Acetylglucosamine Acyltransferase | domain 1 | CATH (utative) |
B | 3.40.1390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase | Chain: A, domain 1 | CATH (utative) |
B | 2.160.10.10 | Mainly Beta | 3 Solenoid | UDP N-Acetylglucosamine Acyltransferase | domain 1 | CATH (utative) |
C | 3.40.1390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase | Chain: A, domain 1 | CATH (utative) |
C | 2.160.10.10 | Mainly Beta | 3 Solenoid | UDP N-Acetylglucosamine Acyltransferase | domain 1 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00132 | Bacterial transferase hexapeptide (six repeats) (Hexapep) | Bacterial transferase hexapeptide (six repeats) | - | Repeat | |
PF04613 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD (LpxD) | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] -> UDP-2,3-bis(3-hydroxytetradec ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011004 | Trimeric LpxA-like superfamily | Homologous Superfamily | |
IPR007691 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD | Family | |
IPR018357 | Hexapeptide transferase, conserved site | Conserved Site | |
IPR020573 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region | Domain | |
IPR001451 | Hexapeptide repeat | Repeat |