Annotations: 6P7X

Structure of the K. lactis CBF3 core - Ndc10 D1D2 complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth E]	SCOP2B Superfamily	lambda integrase clamp domain-like	8053776	3000550	SCOP2B (2022-06-29)
A [auth E]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8053767	3001127	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth A]	V-set	e6p7xA1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: V-set	ECOD (v294.2)
D [auth B]	V-set	e6p7xB1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: V-set	ECOD (v294.2)
C [auth D]	V-set	e6p7xD1	A: beta barrels	X: jelly-roll	H: DUF1107-like	T: DUF1107-like	F: V-set	ECOD (v294.2)
A [auth E]	MAM33	e6p7xE1	A: beta barrels	X: HAD domain-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: MAM33	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth B], E [auth A]	PF16846	Centromere DNA-binding protein complex CBF3 subunit B (Cep3)	Centromere DNA-binding protein complex CBF3 subunit B	-	Family
A [auth E]	PF16787	Centromere DNA-binding protein complex CBF3 subunit, domain 2 (NDC10_II)	Centromere DNA-binding protein complex CBF3 subunit, domain 2	NDC10_II is a the second of five domains on the Kluyveromyces lactis Ndc10 protein. Each subunit of the Ndc10 dimer binds a separate fragment of DNA, suggesting that Ndc10 stabilises a DNA loop at the centromere [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth B], E [auth A]	Cep3	DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding cation binding transition metal ion binding zinc ion binding DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
C [auth D]	Skp1	-	catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein ubiquitination macromolecule modification post-translational protein modification catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	-
B [auth C]	Ctf13	-	-	-
A [auth E]	Ndc10	DNA binding binding nucleic acid binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth B], E [auth A]	IPR036864	Zn(2)-C6 fungal-type DNA-binding domain superfamily	Homologous Superfamily
D [auth B], E [auth A]	IPR001138	Zn(2)Cys(6) fungal-type DNA-binding domain	Domain
D [auth B], E [auth A]	IPR031760	Centromere DNA-binding protein complex CBF3 subunit B, C-terminal	Domain
D [auth B], E [auth A]	IPR051430	Fungal_TF_Env_Response	Unknown
C [auth D]	IPR016073	SKP1 component, POZ domain	Domain
C [auth D]	IPR016072	SKP1 component, dimerisation	Domain
C [auth D]	IPR036296	SKP1-like, dimerisation domain superfamily	Homologous Superfamily
C [auth D]	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
C [auth D]	IPR001232	S-phase kinase-associated protein 1-like	Family
C [auth D]	IPR016897	S-phase kinase-associated protein 1	Family
A [auth E]	IPR038279	Ndc10, domain 2 superfamily	Homologous Superfamily
A [auth E]	IPR031872	Ndc10, domain 2	Domain
A [auth E]	IPR022210	Transcription activator GCR1-like domain	Domain

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