6P4J
Mouse norovirus complexed with GCDCA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6p4ja_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
B | d6p4jb_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
C | d6p4jc_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Calici_coat_C_C | e6p4jA3 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: Calici_coat_C_C | ECOD (1.6) |
A | UNK_F_TYPE | e6p4jA2 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: UNK_F_TYPE | ECOD (1.6) |
A | Rhv_4 | e6p4jA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_4 | ECOD (1.6) |
B | Calici_coat_C_C | e6p4jB3 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: Calici_coat_C_C | ECOD (1.6) |
B | UNK_F_TYPE | e6p4jB1 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: UNK_F_TYPE | ECOD (1.6) |
B | Rhv_4 | e6p4jB2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_4 | ECOD (1.6) |
C | Calici_coat_C_C | e6p4jC2 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: Calici_coat_C_C | ECOD (1.6) |
C | UNK_F_TYPE | e6p4jC3 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: UNK_F_TYPE | ECOD (1.6) |
C | Rhv_4 | e6p4jC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
A | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (utative) |
A | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (utative) |
B | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
B | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (utative) |
B | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (utative) |
C | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
C | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (utative) |
C | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00915 | Calicivirus coat protein (Calici_coat) | Calicivirus coat protein | - | Family | |
PF08435 | Calicivirus coat protein C-terminal (Calici_coat_C) | Calicivirus coat protein C-terminal | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR004005 | Calicivirus coat protein | Domain | |
IPR013643 | Calicivirus coat protein C-terminal | Domain | |
IPR033703 | Picornavirus/Calicivirus coat protein | Domain |