6OCA
Ricin A chain bound to VHH antibody V2G10
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6ocaa_ | Alpha and beta proteins (a+b) | Ribosome inactivating proteins (RIP) | Ribosome inactivating proteins (RIP) | Plant cytotoxins | Ricin A-chain | Castor bean (Ricinus communis ) [TaxId: 3988 ], | SCOPe (2.08) |
C [auth B] | d6ocab_ | Alpha and beta proteins (a+b) | Ribosome inactivating proteins (RIP) | Ribosome inactivating proteins (RIP) | Plant cytotoxins | Ricin A-chain | Castor bean (Ricinus communis ) [TaxId: 3988 ], | SCOPe (2.08) |
B [auth C] | d6ocac_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
D | d6ocad_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RIP | e6ocaA1 | A: a+b two layers | X: RIP/Polo-box domain | H: Ribosome inactivating proteins (RIP) (From Topology) | T: Ribosome inactivating proteins (RIP) | F: RIP | ECOD (1.6) |
C [auth B] | RIP | e6ocaB1 | A: a+b two layers | X: RIP/Polo-box domain | H: Ribosome inactivating proteins (RIP) (From Topology) | T: Ribosome inactivating proteins (RIP) | F: RIP | ECOD (1.6) |
B [auth C] | V-set_12 | e6ocaC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
D | V-set_12 | e6ocaD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.420.10 | Alpha Beta | 3-Layer(aba) Sandwich | Ricin (A subunit) | domain 1 | CATH (utative) |
A | 4.10.470.10 | Few Secondary Structures | Irregular | Ricin (A Subunit), domain 2 | Ricin (A Subunit), domain 2 | CATH (utative) |
C [auth B] | 3.40.420.10 | Alpha Beta | 3-Layer(aba) Sandwich | Ricin (A subunit) | domain 1 | CATH (utative) |
C [auth B] | 4.10.470.10 | Few Secondary Structures | Irregular | Ricin (A Subunit), domain 2 | Ricin (A Subunit), domain 2 | CATH (utative) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth C], D | Heavy Chain | IGHV1 | - | ricin a chain | SAbDab (2024-09-27) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF00161 | Ribosome inactivating protein (RIP) | Ribosome inactivating protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR016139 | Ribosome-inactivating protein, subdomain 2 | Homologous Superfamily |
A, C [auth B] | IPR016138 | Ribosome-inactivating protein, subdomain 1 | Homologous Superfamily |
A, C [auth B] | IPR001574 | Ribosome-inactivating protein | Family |
A, C [auth B] | IPR036041 | Ribosome-inactivating protein superfamily | Homologous Superfamily |
A, C [auth B] | IPR017988 | Ribosome-inactivating protein conserved site | Conserved Site |
A, C [auth B] | IPR017989 | Ribosome-inactivating protein type 1/2 | Family |
A, C [auth B] | IPR035992 | Ricin B-like lectins | Homologous Superfamily |
A, C [auth B] | IPR000772 | Ricin B, lectin domain | Domain |