6OBO
Ricin A chain bound to VHH antibody V6A6
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6oboa_ | Alpha and beta proteins (a+b) | Ribosome inactivating proteins (RIP) | Ribosome inactivating proteins (RIP) | Plant cytotoxins | automated matches | Castor bean (Ricinus communis ) [TaxId: 3988 ], | SCOPe (2.08) |
B | d6obob_ | Alpha and beta proteins (a+b) | Ribosome inactivating proteins (RIP) | Ribosome inactivating proteins (RIP) | Plant cytotoxins | automated matches | Castor bean (Ricinus communis ) [TaxId: 3988 ], | SCOPe (2.08) |
C | d6oboc_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
D | d6obod_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00161 | e6oboA1 | A: a+b two layers | X: RIP/Polo-box domain | H: Ribosome inactivating proteins (RIP) (From Topology) | T: Ribosome inactivating proteins (RIP) | F: PF00161 | ECOD (1.6) |
B | PF00161 | e6oboB1 | A: a+b two layers | X: RIP/Polo-box domain | H: Ribosome inactivating proteins (RIP) (From Topology) | T: Ribosome inactivating proteins (RIP) | F: PF00161 | ECOD (1.6) |
C | PF07686 | e6oboC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D | PF07686 | e6oboD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.420.10 | Alpha Beta | 3-Layer(aba) Sandwich | Ricin (A subunit) | domain 1 | CATH (utative) |
A | 4.10.470.10 | Few Secondary Structures | Irregular | Ricin (A Subunit), domain 2 | Ricin (A Subunit), domain 2 | CATH (utative) |
B | 3.40.420.10 | Alpha Beta | 3-Layer(aba) Sandwich | Ricin (A subunit) | domain 1 | CATH (utative) |
B | 4.10.470.10 | Few Secondary Structures | Irregular | Ricin (A Subunit), domain 2 | Ricin (A Subunit), domain 2 | CATH (utative) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | ricin a chain | SAbDab (2024-08-09) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00161 | Ribosome inactivating protein (RIP) | Ribosome inactivating protein | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016139 | Ribosome-inactivating protein, subdomain 2 | Homologous Superfamily | |
IPR016138 | Ribosome-inactivating protein, subdomain 1 | Homologous Superfamily | |
IPR001574 | Ribosome-inactivating protein | Family | |
IPR036041 | Ribosome-inactivating protein superfamily | Homologous Superfamily | |
IPR017988 | Ribosome-inactivating protein conserved site | Conserved Site | |
IPR017989 | Ribosome-inactivating protein type 1/2 | Family | |
IPR035992 | Ricin B-like lectins | Homologous Superfamily | |
IPR000772 | Ricin B, lectin domain | Domain |